Evidence map›Paper›PMID 34716322›Full record

ArticleNature communications2021

Structural basis of terephthalate recognition by solute binding protein TphC.

Trishnamoni Gautom, Dharmendra Dheeman, Colin Levy, Thomas Butterfield, Guadalupe Alvarez Gonzalez, Philip Le Roy, Lewis Caiger, Karl Fisher, Linus Johannissen, Neil Dixon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. EngineeringApplied and environmental microbiology · 2026
    Article
  3. Review
  4. Review
  5. Review
  6. Optimizing Stability in Dynamic Small-Molecule Binding Proteins.Journal of the American Chemical Society · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. An Ultra-SensitiveApplied and environmental microbiology · 2023
    Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Trishnamoni Gautom *Manchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-7602-1228
Dharmendra Dheeman *Manchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-8933-954X
Colin LevyManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.
Thomas ButterfieldManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.
Guadalupe Alvarez GonzalezManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-4387-2231
Philip Le RoyManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-5496-0272
Lewis CaigerManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-5156-9684
Karl FisherManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-3539-8939
Linus JohannissenManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-0916-9094
Neil DixonManchester Institute of Biotechnology (MIB) and Department of Chemistry, The University of Manchester, Manchester, UK. neil.dixon@manchester.ac.uk.ORCID http://orcid.org/0000-0001-9065-6764
University of Manchester · GBGauhati University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological degradation of Polyethylene terephthalate (PET) plastic and assimilation of the corresponding monomers ethylene glycol and terephthalate (TPA) into central metabolism offers an attractive route for bio-based molecular recycling and bioremediation applications. A key step is the cellular uptake of the non-permeable TPA into bacterial cells which has been shown to be dependent upon the presence of the key tphC gene. However, little is known from a biochemical and structural perspective about the encoded solute binding protein, TphC. Here, we report the biochemical and structural characterisation of TphC in both open and TPA-bound closed conformations. This analysis demonstrates the narrow ligand specificity of TphC towards aromatic para-substituted dicarboxylates, such as TPA and closely related analogues. Further phylogenetic and genomic context analysis of the tph genes reveals homologous operons as a genetic resource for future biotechnological and metabolic engineering efforts towards circular plastic bio-economy solutions.

Indexed as

Bacterial ProteinsCalorimetryComamonasCrystallography, X-RayFluorometryLigandsModels, MolecularMolecular Docking SimulationMutationOperonPhthalic AcidsPhylogenyProtein ConformationXenobioticsBacterial ProteinsLigandsPhthalic Acidsterephthalic acidXenobiotics

Identifiers

PMID34716322
PMCPMC8556258
OpenAlexW3155789194

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.