Evidence map›Paper›PMID 34715079›Full record

ArticleBiophysical journal2021

Contact pairs of RNA with magnesium ions-electrostatics beyond the Poisson-Boltzmann equation.

Benjamin Philipp Fingerhut, Jakob Schauss, Achintya Kundu, Thomas Elsaesser

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Alteration of the Lipid Bilayer Structure by MgLangmuir : the ACS journal of surfaces and colloids · 2026
    Article
  2. Influence of MgACS omega · 2023
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Benjamin Philipp FingerhutMax-Born-Institute, Berlin, Germany. Electronic address: fingerhut@mbi-berlin.de.
Jakob SchaussMax-Born-Institute, Berlin, Germany.
Achintya KunduMax-Born-Institute, Berlin, Germany.
Thomas ElsaesserMax-Born-Institute, Berlin, Germany.
Max-Born-Institute for Nonlinear Optics and Short Pulse Spectroscopy · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The electrostatic interaction of RNA with its aqueous environment is most relevant for defining macromolecular structure and biological function. The attractive interaction of phosphate groups in the RNA backbone with ions in the water environment leads to the accumulation of positively charged ions in the first few hydration layers around RNA. Electrostatics of this ion atmosphere and the resulting ion concentration profiles have been described by solutions of the nonlinear Poisson-Boltzmann equation and atomistic molecular dynamics (MD) simulations. Much less is known on contact pairs of RNA phosphate groups with ions at the RNA surface, regarding their abundance, molecular geometry, and role in defining RNA structure. Here, we present a combined theoretical and experimental study of interactions of a short RNA duplex with magnesium (Mg

Indexed as

MagnesiumRNAIonsMolecular Dynamics SimulationStatic ElectricityIonsMagnesiumRNA

Identifiers

PMID34715079
PMCPMC8715182
OpenAlexW3209239814

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.