Evidence map›Paper›PMID 34715053›Full record

ArticleStem cell reports2021

p53 inactivation unmasks histone methylation-independent WDR5 functions that drive self-renewal and differentiation of pluripotent stem cells.

Qiang Li, Yuanhao Huang, Jing Xu, Fengbiao Mao, Bo Zhou, Lichao Sun, Brian W Basinski, Michael Aksu, Jie Liu, Yali Dou and 1 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Qiang LiDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI 48105, USA.
Yuanhao HuangDepartment and Center of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Jing XuDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI 48105, USA.
Fengbiao MaoDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Bo ZhouDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Lichao SunDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Brian W BasinskiDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI 48105, USA; Department of Pathology, University of Michigan, Ann Arbor, MI, USA.
Michael AksuDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI 48105, USA.
Jie LiuDepartment and Center of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI, USA.
Yali DouDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA; Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI, USA.
Rajesh C RaoDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI 48105, USA; Department and Center of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI, USA; A. Alfred Taubman Medical Research Institute, University of Michigan, Ann Arbor, MI, USA; Center for RNA Biomedicine, University of Michigan, Ann Arbor, MI, USA; Division of Ophthalmology, Surgery Section, VA Ann Arbor Healthsystem, Ann Arbor, MI, USA. Electronic address: rajeshr@umich.edu.
University of Michigan · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
Function of MLL in transcription regulationR01GM082856 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DOU, YALI · 2009 to 2023
$4.0M
Structural insights into the MLL core complexesR01CA250329 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHO, UHN-SOO, DOU, YALI · 2020 to 2024
$3.0M
Molecular Determinants for WDR5-Driven Transcriptional Regulation at Lineage-Specifying Genes During RetinogenesisR01EY030989 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAO, RAJESH C. · 2020 to 2024
$2.2M
Training Program in Translational ResearchT32GM141840 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANDREW P LIEBERMAN, Zaneta Nikolovska-Coleska · 2021 to 2026
$2.0M
Epigenetic Control of Retinal DevelopmentK08EY026654 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAO, RAJESH C. · 2017 to 2019
$666k
NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA250329NEI NIH HHS K08 EY026654NEI NIH HHS R01 EY030989NIGMS NIH HHS R01 GM082856NIGMS NIH HHS T32 GM141840
6 · The paper itself

Abstract

p53 alterations occur during culture of pluripotent stem cells (PSCs), but the significance of these events on epigenetic control of PSC fate determination remains poorly understood. Wdr5 deletion in p53-null (DKO) mouse ESCs (mESCs) leads to impaired self-renewal, defective retinal neuroectoderm differentiation, and de-repression of germ cell/meiosis (GCM)-specific genes. Re-introduction of a WDR5 mutant with defective H3K4 methylation activity into DKO ESCs restored self-renewal and suppressed GCM gene expression but failed to induce retinal neuroectoderm differentiation. Mechanistically, mutant WDR5 targets chromatin that is largely devoid of H3K4me3 and regulates gene expression in p53-null mESCs. Furthermore, MAX and WDR5 co-target lineage-specifying chromatin and regulate chromatin accessibility of GCM-related genes. Importantly, MAX and WDR5 are core subunits of a non-canonical polycomb repressor complex 1 responsible for gene silencing. This function, together with canonical, pro-transcriptional WDR5-dependent MLL complex H3K4 methyltransferase activity, highlight how WDR5 mediates crosstalk between transcription and repression during mESC fate choice.

Indexed as

AnimalsCell DifferentiationCell LineCell Self RenewalChromatinChromatin Immunoprecipitation SequencingGene Expression ProfilingHistonesIntracellular Signaling Peptides and ProteinsMethylationMiceMice, KnockoutMice, TransgenicMouse Embryonic Stem CellsPluripotent Stem CellsRNA-SeqChromatinHistonesIntracellular Signaling Peptides and ProteinsTumor Suppressor Protein p53Wdr5 protein, mousechromatinembryonic stem cellsgerm cellMAXmeiosisneuroectodermp53retinastem cellsWDR5

Identifiers

PMID34715053
PMCPMC8581203
OpenAlexW3209849643

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.