Evidence map›Paper›PMID 34714667›Full record

ArticleScience advances2021

ATP-binding cassette protein ABCF1 couples transcription and genome surveillance in embryonic stem cells through low-complexity domain.

Eun-Bee Choi, Munender Vodnala, Madeleine Zerbato, Jianing Wang, Jaclyn J Ho, Carla Inouye, Lai Ding, Yick W Fong

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. DNA Sensor ABCF1 Phase Separates With cccDNA to Inhibit Hepatitis B Virus Replication.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Eun-Bee ChoiBrigham Regenerative Medicine Center, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0003-4269-4584
Munender VodnalaBrigham Regenerative Medicine Center, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-6219-6243
Madeleine ZerbatoBrigham Regenerative Medicine Center, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0001-6163-1162
Jianing WangBrigham Regenerative Medicine Center, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-2191-5627
Jaclyn J HoDepartment of Molecular and Cell Biology, Li Ka Shing Center for Biomedical and Health Sciences, California Institute for Regenerative Medicine Center of Excellence, University of California at Berkeley, Berkeley, CA, USA.ORCID 0000-0001-9166-5953
Carla InouyeDepartment of Molecular and Cell Biology, Li Ka Shing Center for Biomedical and Health Sciences, California Institute for Regenerative Medicine Center of Excellence, University of California at Berkeley, Berkeley, CA, USA.
Lai DingDepartment of Neurology, Program for Interdisciplinary Neuroscience, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-9067-2307
Yick W FongBrigham Regenerative Medicine Center, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-8498-7169
Brigham and Women's Hospital · USHoward Hughes Medical Institute · US

Funding

Stem cell-specific transcriptional control by dyskerin ribonucleoprotein complexR01HL125527 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FONG, YICK WAH · 2016 to 2019
$1.8M
NHLBI NIH HHS R01 HL125527
6 · The paper itself

Abstract

OCT4 and SOX2 confer pluripotency by recruiting coactivators to activate stem cell–specific transcription. However, the composition of coactivator complexes and their roles in maintaining stem cell fidelity remain unclear. Here, we report the ATP-binding cassette subfamily F member 1 (ABCF1) as a coactivator for OCT4/SOX2 critical for stem cell self-renewal. The intrinsically disordered low-complexity domain (LCD) of ABCF1 contributes to phase separation in vitro and transcriptional activation of pluripotency genes by mediating multivalent interactions with SOX2 and co-dependent coactivators XPC and DKC1. These LCD-driven transcription factor–coactivator interactions critical for pluripotency gene expression are disrupted by DNA damage, likely due to LCD-dependent binding of ABCF1 to damage-generated intracellular DNA fragments instead of SOX2. This study identifies a transcriptional coactivator that uses its LCD to form selective multivalent interactions to regulate stem cell self-renewal and exit from pluripotency when genome integrity is compromised.

Identifiers

PMID34714667
PMCPMC8555894
OpenAlexW3163544298

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.