Evidence map›Paper›PMID 34713604›Full record

ArticleMicrobiologyOpen2021

Characterization of endogenous promoters of GapC1 and GS for recombinant protein expression in Phaeodactylum tricornutum.

Erdenedolgor Erdene-Ochir, Bok-Kyu Shin, Md Nazmul Huda, Eun Ha Lee, Dae-Geun Song, Choonkyun Jung, Cheol-Ho Pan

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Erdenedolgor Erdene-OchirNatural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Gangneung, Republic of Korea.
Bok-Kyu ShinAlgaeprona Inc, Gangneung, Republic of Korea.
Md Nazmul HudaNatural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Gangneung, Republic of Korea.
Eun Ha LeeNatural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Gangneung, Republic of Korea.
Dae-Geun SongNatural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Gangneung, Republic of Korea.
Choonkyun JungDepartment of International Agricultural Technology and Crop Biotechnology Institute/GreenBio Science and Technology, Seoul National University, Pyeongchang, Republic of Korea.ORCID 0000-0001-5643-309X
Cheol-Ho PanNatural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Gangneung, Republic of Korea.
Gangneung–Wonju National University · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although diatoms have been utilized as a cellular factory to produce biopharmaceuticals, recombinant proteins, and biofuels, only a few numbers of gene promoters are available. Therefore, the development of novel endogenous promoters is essential for the production of a range of bioactive substances. Here, we characterized the activities of endogenous promoters glyceraldehyde-3-phosphate dehydrogenase (GapC1) and glutamine synthetase (GS) of Phaeodactylum tricornutum using green fluorescent protein (GFP) under different culture conditions. Compared with the widely used fucoxanthin chlorophyll-binding protein A (fcpA) promoter, the GS promoter constitutively drove the expression of GFP throughout all growth phases of P. tricornutum, regardless of culture conditions. Additionally, the GFP level driven by the GapC1 promoter was the highest at the log phase, similar to the fcpA promoter, and increased light and nitrogen-starvation conditions reduced GFP levels by inhibiting promoter activity. These results suggested that the GS promoter could be utilized as a strong endogenous promoter for the genetic engineering of P. tricornutum.

Indexed as

Promoter Regions, GeneticDiatomsGene ExpressionGlutamate-Ammonia LigaseGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Green Fluorescent ProteinsRecombinant ProteinsGlutamate-Ammonia LigaseGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Green Fluorescent ProteinsRecombinant Proteinsdiatomendogenous promoterglutamine synthetaseglyceraldehyde-3-phosphate dehydrogenasePhaeodactylum tricornutum

Identifiers

PMID34713604
PMCPMC8545674
OpenAlexW3210045443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.