Evidence map›Paper›PMID 34713310›Full record

ArticleAnnals of hematology2022

Somatic hypermutation profiles in stereotyped IGHV4-34 receptors from South American chronic lymphocytic leukemia patients.

Carmen Stanganelli, Davi Coe Torres, Claudia Ortega, María Elena Márquez, Victoria Remedi, Juana Cabrera, Claudia Mardaraz, Camila Galvano, Andrea Krzywinski, Cecilia Lang and 7 more

Abstract readMulticenter Study
PubMed Publisher
In one paragraph

Article in Annals of hematology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Association of Cytogenetics Aberrations andGlobal medical genetics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Carmen StanganelliDivisión Patología Molecular, Instituto de Investigaciones Hematológicas, Academia Nacional de Medicina (ANM), Pacheco de Melo 3081, 1425, Buenos Aires, Argentina. carmen.stanganelli13@gmail.com.
Davi Coe TorresInstituto Nacional de Câncer, Río de Janeiro, RJ, Brazil.
Claudia OrtegaChronic Lymphocytic Leukemia Laboratory, Institut Pasteur de Montevideo, Montevideo, Uruguay.
María Elena MárquezChronic Lymphocytic Leukemia Laboratory, Institut Pasteur de Montevideo, Montevideo, Uruguay.
Victoria RemediHospital Maciel, Administración Servicios de Salud del Estado, Ministerio de Salud, Montevideo, Uruguay.
Juana CabreraDivisión Patología Molecular, Instituto de Investigaciones Hematológicas, Academia Nacional de Medicina (ANM), Pacheco de Melo 3081, 1425, Buenos Aires, Argentina.
Claudia MardarazCentro de Hematología Pavlovsky, Buenos Aires, Argentina.
Camila GalvanoLaboratorio de Genética de Neoplasias Linfoides, Instituto de Medicina Experimental, CONICET-ANM, Buenos Aires, Argentina.
Andrea KrzywinskiLaboratorio de Genética de Neoplasias Linfoides, Instituto de Medicina Experimental, CONICET-ANM, Buenos Aires, Argentina.
Cecilia LangLaboratorio de Especialidades Bioquímicas, Bahía Blanca, Argentina.
Lorena ZanellaLaboratorio de Especialidades Bioquímicas, Bahía Blanca, Argentina.
Evangelina AgrielloLaboratorio de Especialidades Bioquímicas, Bahía Blanca, Argentina.
Raimundo BezaresHospital General de Agudos Teodoro Álvarez, Buenos Aires, Argentina.
Astrid PavlovskyCentro de Hematología Pavlovsky, Buenos Aires, Argentina.
Miguel A PavlovskyCentro de Hematología Pavlovsky, Buenos Aires, Argentina.
Pablo OppezzoChronic Lymphocytic Leukemia Laboratory, Institut Pasteur de Montevideo, Montevideo, Uruguay.
Irma SlavutskyLaboratorio de Genética de Neoplasias Linfoides, Instituto de Medicina Experimental, CONICET-ANM, Buenos Aires, Argentina.
Centro Científico Tecnológico - Bahía Blanca · ARExperimental Medicine and Biology Institute · ARInstitut Pasteur de Montevideo · UYAcademia Nacional de Medicina · ARHospital General de Agudos Dr. TEODORO ALVAREZ · ARHospital Maciel · UYInstituto Nacional do Câncer · BR

Funding

Agencia Nacional de Investigación e Innovación FMV_1_2014_1_104397Agencia Nacional de Promoción Científica y Tecnológica PIDC Nº: 2014-0056Consejo Nacional de Investigaciones Científicas y Técnicas PIP Nº 1122015 0100753Instituto Nacional de Ciência e Tecnologia (BR) CNPq 573806/2008-0Instituto Nacional de Ciência e Tecnologia (BR) FAPERJ E26/170.026/2008
6 · The paper itself

Abstract

Chronic lymphocytic leukemia (CLL) is the most common mature B-cell neoplasm in the West. IGHV4-34 is one of the most frequently used genes in CLL patients, which usually display an indolent outcome. In this study, we explored the mutational profile of CLL patients expressing IGHV4-34 within different stereotypes and their association with prognostic factors and clinical outcome. A multi-institutional cohort of unselected 1444 CLL patients was analyzed by RT-PCR and bidirectional sequencing. Cytogenetics and molecular cytogenetics analyses were also performed. We identified 144 (10%) IGHV4-34 expressing cases, 119 mutated (M), 44 of them with stereotyped B-cell receptors. Subset #4 was the most frequent (56.8% of cases) followed by subsets #16 (13.6%), #29 (6.8%), and #201 (2.3%), with different distribution among countries. Analysis of somatic hypermutation profile showed significant differences among stereotyped subsets for G28>D/E, P45>S, E55>Q, and S64>I changes (p < 0.01) and high frequency of disruption of the glycosylation motif in the VH CDR2 region. All stereotyped IGHV4-34 cases showed normal karyotypes. Deletion 13q14 as a sole alteration was present in 42.8% of stereotyped cases with a different distribution among subsets. A shorter time to first treatment was found in non-stereotyped vs. stereotyped M-IGHV4-34 patients (p = 0.034). Our results add new information supporting the importance of recurrent amino acid changes at particular positions, contributing to refine the molecular characterization of South American CLL patients.

Indexed as

AgedCohort StudiesFemaleGene RearrangementHumansImmunoglobulin Heavy ChainsLeukemia, Lymphocytic, Chronic, B-CellMaleMiddle AgedMutationReceptors, Antigen, B-CellSomatic Hypermutation, ImmunoglobulinSouth AmericaIGHV4-34 protein, humanImmunoglobulin Heavy ChainsReceptors, Antigen, B-CellChronic lymphocytic leukemiaIGHV4-34 geneMutational profileStereotyped receptors

Identifiers

PMID34713310
OpenAlexW3209056677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.