Evidence map›Paper›PMID 34712996›Full record

ArticleSTAR protocols2021

Co-staining human PBMCs with fluorescent antibodies and antibody-oligonucleotide conjugates for cell sorting prior to single-cell CITE-Seq.

Xiaoshan Shi, Gisele V Baracho, Woodrow E Lomas, Stephanie J Widmann, Aaron J Tyznik

Open access · goldAbstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xiaoshan ShiBD Biosciences, 2350 Qume Drive, San Jose, CA 95131, USA.
Gisele V BarachoBD Biosciences, 11077 N Torrey Pines Road, La Jolla, CA 92037, USA.
Woodrow E LomasBD Biosciences, 2350 Qume Drive, San Jose, CA 95131, USA.
Stephanie J WidmannBD Biosciences, 11077 N Torrey Pines Road, La Jolla, CA 92037, USA.
Aaron J TyznikBD Biosciences, 11077 N Torrey Pines Road, La Jolla, CA 92037, USA.
Torrey Pines Institute For Molecular Studies · USBD Biosciences (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The dual interrogation of the transcriptome and proteome with single-cell resolution provides exquisite insights into immune mechanisms in health and disease. Here, we describe a cutting-edge protocol wherein we combine Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-Seq), a technique utilizing antibody-oligonucleotide conjugates (AOCs), with fluorescence-activated cell sorting to enrich rare cell populations. Our protocol incorporates co-staining of cells with both fluorescent antibodies and AOCs simultaneously for subsequent input into the cell sorting and CITE-Seq pipeline. For complete details on the use and execution of this protocol, please refer to Mair et al. (2020).

Indexed as

Leukocytes, MononuclearEpitopesFlow CytometryFluorescent Antibody TechniqueGene Expression ProfilingHumansSingle-Cell AnalysisEpitopesAntibodyBiotechnology and bioengineeringCell isolationFlow Cytometry/Mass CytometryImmunologyMolecular BiologySingle Cell

Identifiers

PMID34712996
PMCPMC8529558
OpenAlexW3206496003

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.