Evidence map›Paper›PMID 34712839›Full record

ArticleSynthetic biology (Oxford, England)2021

Rational gRNA design based on transcription factor binding data.

David Bergenholm, Yasaman Dabirian, Raphael Ferreira, Verena Siewers, Florian David, Jens Nielsen

Abstract read
In one paragraph

Article in Synthetic biology (Oxford, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

David BergenholmDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-0812-058X
Yasaman DabirianDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-8568-6878
Raphael FerreiraDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0001-9881-6232
Verena SiewersDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-9502-9804
Florian DavidDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0003-1831-1619
Jens NielsenDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-9955-6003

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system has become a standard tool in many genome engineering endeavors. The endonuclease-deficient version of Cas9 (dCas9) is also a powerful programmable tool for gene regulation. In this study, we made use of

Indexed as

CRISPRaglycolytic promotersgRNA designSaccharomyces cerevisiaetranscription factor binding

Identifiers

PMID34712839
PMCPMC8546606

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.