Evidence map›Paper›PMID 34711923›Full record

ArticleCommunications biology2021

The Aphelenchus avenae genome highlights evolutionary adaptation to desiccation.

Xuehua Wan, Jennifer A Saito, Shaobin Hou, Scott M Geib, Anton Yuryev, Lynne M Higa, Christopher Z Womersley, Maqsudul Alam

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Frontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Xuehua WanAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, HI, USA. xuehua.wan@hotmail.com.ORCID http://orcid.org/0000-0002-6367-848X
Jennifer A SaitoAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, HI, USA.
Shaobin HouAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, HI, USA.
Scott M GeibTropical Crop and Commodity Protection Research Unit, USDA-ARS Pacific Basin Agricultural Research Center, Hilo, HI, USA.
Anton YuryevElsevier Life Sciences Solutions, Rockville, MD, USA.
Lynne M HigaSchool of Life Sciences, University of Hawaii, Honolulu, HI, USA.
Christopher Z WomersleySchool of Life Sciences, University of Hawaii, Honolulu, HI, USA. womersle@hawaii.edu.ORCID http://orcid.org/0000-0001-6764-2778
Maqsudul AlamAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, HI, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some organisms can withstand complete body water loss (losing up to 99% of body water) and stay in ametabolic state for decades until rehydration, which is known as anhydrobiosis. Few multicellular eukaryotes on their adult stage can withstand life without water. We still have an incomplete understanding of the mechanism for metazoan survival of anhydrobiosis. Here we report the 255-Mb genome of Aphelenchus avenae, which can endure relative zero humidity for years. Gene duplications arose genome-wide and contributed to the expansion and diversification of 763 kinases, which represents the second largest metazoan kinome to date. Transcriptome analyses of ametabolic state of A. avenae indicate the elevation of ATP level for global recycling of macromolecules and enhancement of autophagy in the early stage of anhydrobiosis. We catalogue 74 species-specific intrinsically disordered proteins, which may facilitate A. avenae to survive through desiccation stress. Our findings refine a molecular basis evolving for survival in extreme water loss and open the way for discovering new anti-desiccation strategies.

Indexed as

DesiccationAdaptation, BiologicalAnimalsBiological EvolutionGene DuplicationGene Expression ProfilingHelminth ProteinsHumidityPhosphotransferasesTylenchidaWaterHelminth ProteinsPhosphotransferasesWater

Identifiers

PMID34711923
PMCPMC8553787

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.