Evidence map›Paper›PMID 34711332›Full record

ArticleAnalytica chimica acta2021

Capillary-based reverse transcriptase loop-mediated isothermal amplification for cost-effective and rapid point-of-care COVID-19 testing.

Anto J U K John, Peijun J W He, Ioannis N Katis, P P Galanis, Alice H Iles, Robert W Eason, Collin L Sones

Open access · bronzeAbstract read
In one paragraph

Article in Analytica chimica acta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Clinical use of molecular methods forFrontiers in parasitology · 2023
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Anto J U K JohnOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK. Electronic address: a.j.u.k.john@soton.ac.uk.
Peijun J W HeOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
Ioannis N KatisOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
P P GalanisOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
Alice H IlesOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
Robert W EasonOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
Collin L SonesOptoelectronics Research Centre, University of Southampton, SO17 1BJ, UK.
University of Southampton · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the SARS-CoV-2 pandemic continues to spread, the necessity for rapid, easy diagnostic capabilities could never have been more crucial. With this aim in mind, we have developed a cost-effective and time-saving testing methodology/strategy that implements a sensitive reverse transcriptase loop-mediated amplification (RT-LAMP) assay within narrow, commercially available and cheap, glass capillaries for detection of the SARS-CoV-2 viral RNA. The methodology is compatible with widely used laboratory-based molecular testing protocols and currently available infrastructure. It employs a simple rapid extraction protocol that lyses the virus, releasing sufficient genetic material for amplification. This extracted viral RNA is then amplified using a SARS-CoV-2 RT-LAMP kit, at a constant temperature and the resulting amplified product produces a colour change which can be visually interpreted. This testing protocol, in conjunction with the RT-LAMP assay, has a sensitivity of ∼100 viral copies per reaction of a sample and provides results in a little over 30 min. As the assay is carried out in a water bath, commonly available within most testing laboratories, it eliminates the need for specialised instruments and associated skills. In addition, our testing pathway requires a significantly reduced quantity of reagents per test while providing comparable sensitivity and specificity to the RT-LAMP kit used in this study. While the conventional technique requires 25 μl of reagent, our test only utilises less than half the quantity (10 μl). Thus, with its minimalistic approach, this capillary-based assay could be a promising alternative to the conventional testing, owing to the fact that it can be performed in resource-limited settings, using readily available apparatus, and has the potential of increasing the overall testing capacity, while also reducing the burden on supply chains for mass testing.

Indexed as

COVID-19CapillariesClinical Laboratory TechniquesCost-Benefit AnalysisCOVID-19 TestingHumansMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesPoint-of-Care SystemsPoint-of-Care TestingRNA-Directed DNA PolymeraseRNA, ViralSARS-CoV-2Sensitivity and SpecificityRNA-Directed DNA PolymeraseRNA, ViralCapillary polymerase chain reaction (PCR)COVID-19Loop-mediated isothermal amplification (LAMP)Molecular diagnostic

Identifiers

PMID34711332
PMCPMC8406210
OpenAlexW3196705540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.