Evidence map›Paper›PMID 34711267›Full record

ArticleGenome medicine2021

Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in China.

Hongbin Chen, Yuyao Yin, Lucy van Dorp, Liam P Shaw, Hua Gao, Mislav Acman, Jizhen Yuan, Fengning Chen, Shijun Sun, Xiaojuan Wang and 5 more

Abstract read
In one paragraph

Article in Genome medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. iScience · 2026
    Article
  2. Article
  3. Prevalence and antimicrobial susceptibility ofOne health (Amsterdam, Netherlands) · 2026
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  19. Methicillin-sensitiveMicrobial genomics · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Hongbin Chen *Department of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Yuyao Yin *Department of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Lucy van Dorp *UCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK. lucy.dorp.12@ucl.ac.uk.
Liam P ShawUCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK.
Hua GaoDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Mislav AcmanUCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK.
Jizhen YuanDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Fengning ChenDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Shijun SunDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Xiaojuan WangDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Shuguang LiDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Yawei ZhangDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China.
Rhys A FarrerUCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK.
Hui WangDepartment of Clinical Laboratory, Peking University People's Hospital, Beijing, 100044, China. wanghui@pkuph.edu.cn.ORCID 0000-0001-9220-0357
Francois BallouxUCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK. f.balloux@ucl.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/R01356X/1Medical Research Council MR/N006364/2Medical Research Council MR/P007597/1Medical Research Council MR/V033417/1Wellcome TrustWellcome Trust 215239/Z/19/ZWellcome Trust 220422/Z/20/Z
6 · The paper itself

Abstract

backgroundMethicillin-resistant Staphylococcus aureus (MRSA) is a major nosocomial pathogen subdivided into lineages termed sequence types (STs). Since the 1950s, successive waves of STs have appeared and replaced previously dominant lineages. One such event has been occurring in China since 2013, with community-associated (CA-MRSA) strains including ST59 largely replacing the previously dominant healthcare-associated (HA-MRSA) ST239. We previously showed that ST59 isolates tend to have a competitive advantage in growth experiments against ST239. However, the underlying genomic and phenotypic drivers of this replacement event are unclear.

methodsHere, we investigated the replacement of ST239 using whole-genome sequencing data from 204 ST239 and ST59 isolates collected in Chinese hospitals between 1994 and 2016. We reconstructed the evolutionary history of each ST and considered two non-mutually exclusive hypotheses for ST59 replacing ST239: antimicrobial resistance (AMR) profile and/or ability to colonise and persist in the environment through biofilm formation. We also investigated the differences in cytolytic activity, linked to higher virulence, between STs. We performed an association study using the presence and absence of accessory virulence genes.

resultsST59 isolates carried fewer AMR genes than ST239 and showed no evidence of evolving towards higher AMR. Biofilm production was marginally higher in ST59 overall, though this effect was not consistent across sub-lineages so is unlikely to be a sole driver of replacement. Consistent with previous observations of higher virulence in CA-MRSA STs, we observed that ST59 isolates exhibit significantly higher cytolytic activity than ST239 isolates, despite carrying on average fewer putative virulence genes. Our association study identified the chemotaxis inhibitory protein (chp) as a strong candidate for involvement in the increased virulence potential of ST59. We experimentally validated the role of chp in increasing the virulence potential of ST59 by creating Δchp knockout mutants, confirming that ST59 can carry chp without a measurable impact on fitness.

conclusionsOur results suggest that the ongoing replacement of ST239 by ST59 in China is not associated to higher AMR carriage or biofilm production. However, the increase in ST59 prevalence is concerning since it is linked to a higher potential for virulence, aided by the carriage of the chp gene.

Indexed as

Anti-Bacterial AgentsBiofilmsChinaEvolution, MolecularGenome, BacterialGenomicsGenotypeHospitalsHumansMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMolecular EpidemiologyMultilocus Sequence TypingPrevalenceStaphylococcal InfectionsVirulenceAnti-Bacterial AgentsVirulence FactorsLineage replacementMethicillin-resistant Staphylococcus aureus (MRSA)Molecular evolutionPhylogenyPhylogeographyVirulence

Identifiers

PMID34711267
PMCPMC8555231

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.