Evidence map›Paper›PMID 34705823›Full record

ArticlePLoS neglected tropical diseases2021

X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes.

John Mattick, Silvia Libro, Robin Bromley, Wanpen Chaicumpa, Matthew Chung, Darren Cook, Mohammad Behram Khan, Nikhil Kumar, Yee-Ling Lau, Shailja Misra-Bhattacharya and 13 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

John MattickInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.ORCID 0000-0002-8743-1158
Silvia LibroNew England Biolabs, Ipswich, Massachusetts, United States of America.ORCID 0000-0003-0230-3876
Robin BromleyInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.
Wanpen ChaicumpaDepartment of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Matthew ChungInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.ORCID 0000-0002-9545-523X
Darren CookCentre for Neglected Tropical Diseases, Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.ORCID 0000-0002-5231-1236
Mohammad Behram KhanDepartment of Parasitology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Nikhil KumarInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.
Yee-Ling LauDepartment of Parasitology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Shailja Misra-BhattacharyaDivision of Parasitology, CSIR-Central Drug Research Institute, Lucknow, India.
Ramakrishna RaoDivision of Infectious Diseases, Washington University School of Medicine, St Louis, Missouri, United States of America.ORCID 0000-0002-3710-4642
Lisa SadzewiczInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.
Atiporn SaeungCenter of Insect Vector Study, Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.ORCID 0000-0003-3550-5992
Mohd ShahabDivision of Parasitology, CSIR-Central Drug Research Institute, Lucknow, India.
Benjamin C SparklinInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.
Andrew StevenCentre for Neglected Tropical Diseases, Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.ORCID 0000-0001-6395-562X
Joseph D TurnerCentre for Neglected Tropical Diseases, Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.
Luke J TallonInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.
Mark J TaylorCentre for Neglected Tropical Diseases, Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.
Andrew R MoorheadDepartment of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.ORCID 0000-0002-6473-3743
Michelle MichalskiUniversity of Wisconsin Oshkosh, Oshkosh, Wisconsin, United States of America.
Jeremy M FosterNew England Biolabs, Ipswich, Massachusetts, United States of America.ORCID 0000-0001-5107-6513
Julie C Dunning HotoppInstitute for Genome Science, University of Maryland, Baltimore, Maryland, United States of America.ORCID 0000-0003-3862-986X

Funding

Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, OWEN R · 2014 to 2023
$36.5M
NIAID NIH HHS U19 AI110820
6 · The paper itself

Abstract

The sequence diversity of natural and laboratory populations of Brugia pahangi and Brugia malayi was assessed with Illumina resequencing followed by mapping in order to identify single nucleotide variants and insertions/deletions. In natural and laboratory Brugia populations, there is a lack of sequence diversity on chromosome X relative to the autosomes (πX/πA = 0.2), which is lower than the expected (πX/πA = 0.75). A reduction in diversity is also observed in other filarial nematodes with neo-X chromosome fusions in the genera Onchocerca and Wuchereria, but not those without neo-X chromosome fusions in the genera Loa and Dirofilaria. In the species with neo-X chromosome fusions, chromosome X is abnormally large, containing a third of the genetic material such that a sizable portion of the genome is lacking sequence diversity. Such profound differences in genetic diversity can be consequential, having been associated with drug resistance and adaptability, with the potential to affect filarial eradication.

Indexed as

Genetic VariationAnimalsBrugiaChromosome AberrationsGenome, HelminthX Chromosome

Identifiers

PMID34705823
PMCPMC8575316

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.