Evidence map›Paper›PMID 34705497›Full record

ArticleScience advances2021

Identification and optimization of molecular glue compounds that inhibit a noncovalent E2 enzyme-ubiquitin complex.

Daniel St-Cyr, Derek F Ceccarelli, Stephen Orlicky, Almer M van der Sloot, Xiaojing Tang, Susan Kelso, Susan Moore, Clint James, Ganna Posternak, Jasmin Coulombe-Huntington and 4 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Activation of parkin by a molecular glue.Nature communications · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molecular Glue Discovery: Current and Future Approaches.Journal of medicinal chemistry · 2023
    Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. From seeds to trees: how E2 enzymes grow ubiquitin chains.Biochemical Society transactions · 2023
    Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Daniel St-CyrInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0003-2432-6585
Derek F CeccarelliCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.ORCID 0000-0002-2674-9234
Stephen OrlickyCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Almer M van der SlootInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0003-0049-2044
Xiaojing TangCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Susan KelsoCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.ORCID 0000-0002-1759-0364
Susan MooreInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0001-5401-2187
Clint JamesInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0002-2407-929X
Ganna PosternakCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Jasmin Coulombe-HuntingtonInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.
Thierry BertomeuInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.
Anne MarinierInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0002-0116-8345
Frank SicheriCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.ORCID 0000-0002-9824-2117
Mike TyersInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.ORCID 0000-0002-9713-9994

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
NIGMS NIH HHS P30 GM124165
6 · The paper itself

Abstract

Pharmacological control of the ubiquitin-proteasome system (UPS) is of intense interest in drug discovery. Here, we report the development of chemical inhibitors of the ubiquitin-conjugating (E2) enzyme CDC34A (also known as UBE2R1), which donates activated ubiquitin to the cullin-RING ligase (CRL) family of ubiquitin ligase (E3) enzymes. A FRET-based interaction assay was used to screen for novel compounds that stabilize the noncovalent complex between CDC34A and ubiquitin, and thereby inhibit the CDC34A catalytic cycle. An isonipecotamide hit compound was elaborated into analogs with ~1000-fold increased potency in stabilizing the CDC34A-ubiquitin complex. These analogs specifically inhibited CDC34A-dependent ubiquitination in vitro and stabilized an E2~ubiquitin thioester reaction intermediate in cells. The x-ray crystal structure of a CDC34A-ubiquitin-inhibitor complex uncovered the basis for analog structure-activity relationships. The development of chemical stabilizers of the CDC34A-ubiquitin complex illustrates a general strategy for de novo discovery of molecular glue compounds that stabilize weak protein interactions.

Identifiers

PMID34705497
PMCPMC10763754

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.