Evidence map›Paper›PMID 34705461›Full record

ArticleJournal of the American Chemical Society2021

Small Molecule Control of Morpholino Antisense Oligonucleotide Function through Staudinger Reduction.

Kristie Darrah, Joshua Wesalo, Bradley Lukasak, Michael Tsang, James K Chen, Alexander Deiters

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  6. Expanding the Genetic Code ofACS chemical biology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Bicyclic Caged Morpholino Oligonucleotides for Optical Gene Silencing.Chembiochem : a European journal of chemical biology · 2022
    Article
  14. Optical Control of MicroRNA Function in Zebrafish Embryos.Journal of the American Chemical Society · 2022
    Article
  15. Molecules (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kristie DarrahDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
Joshua WesaloDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
Bradley LukasakDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
Michael TsangDepartment of Developmental Biology, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
James K ChenDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, California 94305, United States.ORCID 0000-0002-9220-8436
Alexander DeitersDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.ORCID 0000-0003-0234-9209
University of Pittsburgh · USStanford University · US

Funding

Chemically Triggered Morpholino Antisense OligonucleotidesR01GM112728 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEITERS, ALEXANDER · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM112728
6 · The paper itself

Abstract

Conditionally activated, caged morpholino antisense agents (cMOs) are tools that enable the temporal and spatial investigation of gene expression, regulation, and function during embryonic development. Cyclic MOs are conformationally gated oligonucleotide analogs that do not block gene expression until they are linearized through the application of an external trigger, such as light or enzyme activity. Here, we describe the first examples of small molecule-responsive cMOs, which undergo rapid and efficient decaging via a Staudinger reduction. This is enabled by a highly flexible linker design that offers opportunities for the installation of chemically activated, self-immolative motifs. We synthesized cyclic cMOs against two distinct, developmentally relevant genes and demonstrated phosphine-triggered knockdown of gene expression in zebrafish embryos. This represents the first report of a small molecule-triggered antisense agent for gene knockdown, adding another bioorthogonal entry to the growing arsenal of gene knockdown tools.

Indexed as

AnimalsEmbryo, NonmammalianFluorescent DyesGene Knockdown TechniquesGenes, DevelopmentalNucleic Acid ConformationOligonucleotidesOligonucleotides, AntisenseRhodaminesThionucleotidesZebrafishFluorescent DyesOligonucleotidesOligonucleotides, AntisenseRhodaminesThionucleotides

Identifiers

PMID34705461
PMCPMC9014490
OpenAlexW3210255109

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.