Evidence map›Paper›PMID 34704808›Full record

ArticleMicrobiology spectrum2021

Mapping SARS-CoV-2 Antibody Epitopes in COVID-19 Patients with a Multi-Coronavirus Protein Microarray.

David Camerini, Arlo Z Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, Adam Shandling, Vu Huynh, Andy A Teng, Gary Hermanson and 13 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 56 citations in OpenAlex.

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  13. Development of practical techniques for simultaneous detection and distinction of current and emerging SARS-CoV-2 variants.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 1 country.

David CameriniAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Arlo Z RandallAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Krista Trappl-KimmonsAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Amit OberaiAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Christopher HungAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Joshua EdgarAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Adam ShandlingAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Vu HuynhAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Andy A TengAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Gary HermansonAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Jozelyn V PabloAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Megan M StumpfCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Sandra N LesterCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Jennifer HarcourtCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Azaibi TaminCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Mohammed RasheedCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Natalie J ThornburgCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Panayampalli S SatheshkumarCenters for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Xiaowu LiangAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Richard B KennedyMayo Clinicgrid.66875.3a, Rochester, Minnesota, USA.
Angela YeeAntigen Discovery Incorporated (ADI), Irvine, California, USA.
Michael Townsend *Centers for Disease Control and Preventiongrid.416738.f, Atlanta, Georgia, USA.
Joseph J Campo *Antigen Discovery Incorporated (ADI), Irvine, California, USA.
Antigen Discovery (United States) · USCenters for Disease Control and Prevention · USMayo Clinic · USUniversity of California, Irvine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid worldwide spread of SARS-CoV-2 has accelerated research and development for controlling the COVID-19 pandemic. A multi-coronavirus protein microarray was created containing full-length proteins, overlapping protein fragments of various lengths, and peptide libraries from SARS-CoV-2 and four other human coronaviruses. Sera from confirmed COVID-19 patients as well as unexposed individuals were applied to multicoronavirus arrays to identify specific antibody reactivity. High-level IgG, IgM, and IgA reactivity to structural proteins S, M, and N of SARS-CoV-2, as well as accessory proteins such as ORF3a and ORF7a, were observed that were specific to COVID-19 patients. Antibody reactivity against overlapping 100-, 50-, and 30-amino acid fragments of SARS-CoV-2 proteins was used to identify antigenic regions. Numerous proteins of SARS-CoV, Middle East respiratory syndrome coronavirus (MERS-CoV), and the endemic human coronaviruses HCoV-NL63 and HCoV-OC43 were also more reactive with IgG, IgM, and IgA in COVID-19 patient sera than in unexposed control sera, providing further evidence of immunologic cross-reactivity between these viruses. Whereas unexposed individuals had minimal reactivity against SARS-CoV-2 proteins that poorly correlated with reactivity against HCoV-NL63 and HCoV-OC43 S2 and N proteins, COVID-19 patient sera had higher correlation between SARS-CoV-2 and HCoV responses, suggesting that

Indexed as

Antibodies, ViralBinding Sites, AntibodyCoronavirus NL63, HumanCoronavirus Nucleocapsid ProteinsCoronavirus OC43, HumanCOVID-19Cross ReactionsEnzyme-Linked Immunosorbent AssayEpitopesHumansImmunoglobulin AImmunoglobulin GImmunoglobulin MMiddle East Respiratory Syndrome CoronavirusPhosphoproteinsProtein Array AnalysisAntibodies, ViralCoronavirus Nucleocapsid ProteinsEpitopesImmunoglobulin AImmunoglobulin GImmunoglobulin Mnucleocapsid phosphoprotein, SARS-CoV-2ORF3a protein, SARS-CoV-2ORF7a protein, SARS-CoV-2PhosphoproteinsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Viral ProteinsViroporin Proteinsantibody binding sitesCOVID-19HCoVSARS-CoV-2

Identifiers

PMID34704808
PMCPMC8549749
OpenAlexW3208653966

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.