Evidence map›Paper›PMID 34703849›Full record

ArticleNeurobiology of stress2021

Transcriptomics of the depressed and PTSD brain.

Jing Zhang, Alfred P Kaye, Jiawei Wang, Matthew J Girgenti

Abstract read
In one paragraph

Article in Neurobiology of stress, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jing ZhangDepartment of Computer Science, University of California- Irvine, Irvine, CA, USA.
Alfred P KayeDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA.
Jiawei WangProgram of Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.
Matthew J GirgentiDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Determining the role of noradrenergic heterogeneity in innate threat responseK08MH122733 · NIMH · YALE UNIVERSITY · PI KAYE, ALFRED P · 2020 to 2024
$975k
A big data approach to explore epigenetic heterogeneity and interpret noncoding variants for psychiatric disordersK01MH123896 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI ZHANG, JING · 2020 to 2023
$431k
NCATS NIH HHS UL1 TR001863NIMH NIH HHS K01 MH123896NIMH NIH HHS K08 MH122733
6 · The paper itself

Abstract

Stress is the response of an organism to demands for change, yet excessive or chronic stress contributes to nearly all psychiatric disorders. The advent of high-throughput transcriptomic methods such as single cell RNA sequencing poses new opportunities to understand the neurobiology of stress, yet substantial barriers to understanding stress remain. Stress adaptation is an organismal survival mechanism conserved across all organisms, yet there is an infinity of potential stressful experiences. Unraveling shared and separate transcriptional programs for adapting to stressful experience remains a challenge, despite methodological and analytic advances. Here we review the state of the field focusing on the technologies used to study the transcriptome for the stress neurobiologist, and also attempt to identify central questions about the heterogeneity of stress for those applying transcriptomic approaches. We further explore how postmortem transcriptome studies aided by preclinical animal models are converging on common molecular pathways for adaptation to aversive experience. Finally, we discuss approaches to integrate large genomic datasets with human neuroimaging and other datasets.

Indexed as

Animal behaviorMDDPostmortem brainPTSDStress transcriptomics

Identifiers

PMID34703849
PMCPMC8524242

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.