Evidence map›Paper›PMID 34702977›Full record

ArticleNature microbiology2021

Ancestral sequence reconstruction pinpoints adaptations that enable avian influenza virus transmission in pigs.

Wen Su, Rhodri Harfoot, Yvonne C F Su, Jennifer DeBeauchamp, Udayan Joseph, Jayanthi Jayakumar, Jeri-Carol Crumpton, Trushar Jeevan, Adam Rubrum, John Franks and 18 more

Abstract read
In one paragraph

Article in Nature microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Wen SuSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Rhodri HarfootDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yvonne C F SuProgramme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore.ORCID http://orcid.org/0000-0003-4349-9211
Jennifer DeBeauchampDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Udayan JosephProgramme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore.
Jayanthi JayakumarProgramme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore.
Jeri-Carol CrumptonDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Trushar JeevanDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Adam RubrumDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
John FranksDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Philippe Noriel Q PascuaDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Christina KackosDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yuqin ZhangSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Mengting ZhangSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Yue JiSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Huyen Trang BuiSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Jeremy C JonesDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-9980-2112
Lisa KercherDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Scott KraussDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Stephan PleschkaInstitute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany.
Michael C W ChanSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.
Robert G WebsterDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Chung-Yi WuGenomics Research Center, Academia Sinica, Taipei, Taiwan, Republic of China.
Kristien Van ReethLaboratory of Virology, Faculty of Veterinary Medicine, Department of Virology, Parasitology and Immunology, Ghent University, Merelbeke, Belgium.
Malik PeirisSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.ORCID http://orcid.org/0000-0001-8217-5995
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA. Richard.Webby@stjude.org.ORCID http://orcid.org/0000-0002-4397-7132
Gavin J D SmithProgramme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore. gavin.smith@duke-nus.edu.sg.ORCID http://orcid.org/0000-0001-5031-468X
Hui-Ling YenSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China. hyen@hku.hk.ORCID http://orcid.org/0000-0003-2493-3609

Funding

NIAID NIH HHS HHSN272201400006C
6 · The paper itself

Abstract

Understanding the evolutionary adaptations that enable avian influenza viruses to transmit in mammalian hosts could allow better detection of zoonotic viruses with pandemic potential. We applied ancestral sequence reconstruction to gain viruses representing different adaptive stages of the European avian-like (EA) H1N1 swine influenza virus as it transitioned from avian to swine hosts since 1979. Ancestral viruses representing the avian-like precursor virus and EA swine influenza viruses from 1979-1983, 1984-1987 and 1988-1992 were reconstructed and characterized. Glycan-binding analyses showed stepwise changes in the haemagglutinin receptor-binding specificity of the EA swine influenza viruses-that is, from recognition of both α2,3- and α2,6-linked sialosides to recognition of α2,6-linked sialosides only; however, efficient transmission in piglets was enabled by adaptive changes in the viral polymerase protein and nucleoprotein, which have been fixed since 1983. PB1-Q621R and NP-R351K increased viral replication and transmission in piglets when introduced into the 1979-1983 ancestral virus that lacked efficient transmissibility. The stepwise adaptation of an avian influenza virus to a mammalian host suggests that there may be opportunities to intervene and prevent interspecies jumps through strategic coordination of surveillance and risk assessment activities.

Indexed as

Adaptation, PhysiologicalAnimalsBirdsHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H1N1 SubtypeInfluenza in BirdsOrthomyxoviridae InfectionsPhylogenyPolysaccharidesReceptors, VirusSwineSwine DiseasesVirus ReplicationHemagglutinin Glycoproteins, Influenza VirusPolysaccharidesReceptors, Virus

Identifiers

PMID34702977
PMCPMC8557130

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.