Evidence map›Paper›PMID 34702854›Full record

ArticleScientific reports2021

Transcriptomic and epigenomic analyses uncovered Lrrc15 as a contributing factor to cartilage damage in osteoarthritis.

Purva Singh, Mengying Wang, Piali Mukherjee, Samantha G Lessard, Tania Pannellini, Camila B Carballo, Scott A Rodeo, Mary B Goldring, Miguel Otero

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Identification of potential pathogenic genes related to osteoporosis and osteoarthritis.Technology and health care : official journal of the European Society for Engineering and Medicine · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Purva Singh *Hospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Mengying Wang *Hospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Piali MukherjeeWeill Cornell Medicine, New York, NY, 10021, USA.
Samantha G LessardHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Tania PannelliniHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Camila B CarballoHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Scott A RodeoHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Mary B GoldringHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA.
Miguel OteroHospital for Special Surgery, HSS Research Institute, New York, NY, 10021, USA. OteroM@hss.edu.
Hospital for Special Surgery · USCornell University · USWeill Cornell Medicine · US

Funding

Impact of the DNA Methylome in Chondrocyte Hypertrophy in OsteoarthritisR21AG049980 · NIA · HOSPITAL FOR SPECIAL SURGERY · PI OTERO ADRAN, MIGUEL · 2016 to 2017
$484k
NIA NIH HHS R21 AG049980
6 · The paper itself

Abstract

In osteoarthritis (OA), articular chondrocytes display phenotypic and functional changes associated with epigenomic alterations. These changes contribute to the disease progression, which is characterized by dysregulated reparative processes and abnormal extracellular matrix remodeling leading to cartilage degradation. Recent studies using a murine model of posttraumatic OA highlighted the contribution of changes in DNA hydroxymethylation (5hmC) to OA progression. Here, we integrated transcriptomic and epigenomic analyses in cartilage after induction of OA to show that the structural progression of OA is accompanied by early transcriptomic and pronounced DNA methylation (5mC) changes in chondrocytes. These changes accumulate over time and are associated with recapitulation of developmental processes, including cartilage development, chondrocyte hypertrophy, and ossification. Our integrative analyses also uncovered that Lrrc15 is differentially methylated and expressed in OA cartilage, and that it may contribute to the functional and phenotypic alterations of chondrocytes, likely coordinating stress responses and dysregulated extracellular matrix remodeling.

Indexed as

DNA MethylationEpigenomeTranscriptomeAnimalsCartilage, ArticularEpigenomicsGene Expression ProfilingHumansMaleMembrane ProteinsMiceOsteoarthritisLRRC15 protein, humanLrrc15 protein, mouseMembrane Proteins

Identifiers

PMID34702854
PMCPMC8548547
OpenAlexW3208146621

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.