Evidence map›Paper›PMID 34699585›Full record

ArticleGenetics and molecular biology2021

In silico comparisons of lipid-related genes between Mycobacterium tuberculosis and BCG vaccine strains.

Alice Sarno, Julia Bitencourt, Adriano Queiroz, Sergio Arruda

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alice SarnoFundação Oswaldo Cruz, Instituto Gonçalo Moniz, Laboratório Avançado em Saúde Pública, Salvador, BA, Brazil.
Julia BitencourtFundação Oswaldo Cruz, Instituto Gonçalo Moniz, Laboratório Avançado em Saúde Pública, Salvador, BA, Brazil.
Adriano QueirozFundação Oswaldo Cruz, Instituto Gonçalo Moniz, Laboratório Avançado em Saúde Pública, Salvador, BA, Brazil.
Sergio ArrudaFundação Oswaldo Cruz, Instituto Gonçalo Moniz, Laboratório Avançado em Saúde Pública, Salvador, BA, Brazil.ORCID http://orcid.org/0000-0002-3071-6339

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite highly variable efficacy, BCG (Bacillus Calmette-Guérin) is the only vaccine available to prevent the tuberculosis (TB). Genomic heterogeneity between attenuated BCG strains and virulent Mycobacterium tuberculosis might help to explain this vaccine's impaired capacity to induce long-term protection. Here, we investigate the lipid-related genes absent in attenuated BCG strains in order to correlate changes in both lipid metabolism and cell-wall lipid content to vaccine impairment. Whole genome sequences of M. tuberculosis H37Rv and the six most used BCG strains worldwide were aligned and the absent regions functionally categorized. Genomes of the BCG strains showed a total of 14 non-homologous lipid-related genes, including those belonging to mce3 operon, as well as the gene echaA1, which encodes an enoyl-CoA hydratase, and the genes encoding phospholipases PlcA, PlcB and PlcC. Taken together, the depletion of these M. tuberculosis H37Rv genomic regions were associated with marked alterations in lipid-related genes of BCG strains. Such alterations may indicate a dormant-like state and can be determining factors to the vaccine's inability to induce long-term protection. These lipids can be further evaluated as an adjuvant to boost the current BCG-based vaccine.

Identifiers

PMID34699585
PMCPMC8547388

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.