Evidence map›Paper›PMID 34699229›Full record

ArticleJournal of proteome research2021

Untargeted Metabolome- and Transcriptome-Wide Association Study Suggests Causal Genes Modulating Metabolite Concentrations in Urine.

Reyhan Sönmez Flitman, Bita Khalili, Zoltan Kutalik, Rico Rueedi, Anneke Brümmer, Sven Bergmann

Open access · hybridAbstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Clinical Metabolomic Landscape of Cardiovascular Physiology and Disease.Journal of the American Heart Association · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Reyhan Sönmez FlitmanDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.ORCID 0000-0002-4556-4075
Bita KhaliliDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.ORCID 0000-0001-5630-1812
Zoltan KutalikDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.
Rico RueediDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.
Anneke BrümmerDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.ORCID 0000-0002-3576-0750
Sven BergmannDepartment of Computational Biology, University of Lausanne, Lausanne 1015, Switzerland.
SIB Swiss Institute of Bioinformatics · CH

Funding

INTEGRATION OF METABOLOMICS AND GENOMICS DATA TO INVESTIGATE CARDIOVASCULAR RISKR03CA211815 · NCI · UNIVERSITY OF LAUSANNE · PI BERGMANN, SVEN · 2016 to 2016
$134k
NCI NIH HHS R03 CA211815
6 · The paper itself

Abstract

Gene products can affect the concentrations of small molecules (aka "metabolites"), and conversely, some metabolites can modulate the concentrations of gene transcripts. While many specific instances of this interplay have been revealed, a global approach to systematically uncover human gene-metabolite interactions is still lacking. We performed a metabolome- and transcriptome-wide association study to identify genes influencing the human metabolome using untargeted metabolome features, extracted from

Indexed as

Body FluidsTranscriptomeHumansMagnetic Resonance SpectroscopyMetabolomeMetabolomicsALMS1genome-wide association studyHPS1metabolomicsN-acetylated compoundsNAT8PYROXD2transcriptomicstrimethylamine

Identifiers

PMID34699229
PMCPMC9286311
OpenAlexW3209901575

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.