Evidence map›Paper›PMID 34698806›Full record

ArticleThe Journal of experimental medicine2021

Dnmt3a-mutated clonal hematopoiesis promotes osteoporosis.

Peter Geon Kim, Abhishek Niroula, Veronica Shkolnik, Marie McConkey, Amy E Lin, Mikołaj Słabicki, John P Kemp, Alexander Bick, Christopher J Gibson, Gabriel Griffin and 18 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed, 1 pooled it
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 1 synthesis or guideline pooled it, 151 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Article
  7. Exacerbation of inflammatory bone loss in TET2-driven clonal hematopoiesis.Journal of immunology (Baltimore, Md. : 1950) · 2026
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  19. Opportunities to Avoid Invasive Cancer by Diagnosis and Interception of Preneoplastic Lesions and Cancer Risk Conditions.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
  20. Review

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 5 countries.

Peter Geon KimDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-8716-8759
Abhishek NiroulaDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-5904-0635
Veronica ShkolnikDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-9043-1503
Marie McConkeyDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-9500-018X
Amy E LinDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0001-6723-5443
Mikołaj SłabickiDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0001-6317-9296
John P KempInstitute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0002-9105-2249
Alexander BickDivision of Genetic Medicine, Vanderbilt University, Nashville, TN.ORCID 0000-0001-5824-9595
Christopher J GibsonDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-3700-5310
Gabriel GriffinBroad Institute of Harvard and MIT, Cambridge, MA.ORCID 0000-0002-4042-6757
Aswin SekarDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0003-0406-0935
Daniel J BrooksCenter for Advanced Orthopedic Studies, Beth Israel Deaconess Medical Center, Boston, MA.ORCID 0000-0001-7408-9851
Waihay J WongDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0003-2023-6590
Drew N CohenDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0001-5263-4409
Md Mesbah UddinBroad Institute of Harvard and MIT, Cambridge, MA.ORCID 0000-0003-1846-0411
Wesley J ShinDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0003-0627-0821
James PirruccelloCenter for Genomic Medicine, Cardiovascular Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0001-6088-4037
Jonathan M TsaiDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0001-5868-2305
Mridul AgrawalDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0002-5455-2543
Douglas P KielBroad Institute of Harvard and MIT, Cambridge, MA.ORCID 0000-0001-8474-0310
Mary L BouxseinCenter for Advanced Orthopedic Studies, Beth Israel Deaconess Medical Center, Boston, MA.ORCID 0000-0002-7027-7414
J Brent RichardsCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, and Department of Human Genetics, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-3746-9086
David M EvansInstitute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0003-0663-4621
Marc N WeinBroad Institute of Harvard and MIT, Cambridge, MA.ORCID 0000-0002-6015-8147
Julia F CharlesDepartment of Orthopaedic Surgery, Brigham and Women's Hospital, Boston, MA.ORCID 0000-0002-5875-314X
Siddhartha JaiswalDepartment of Pathology, Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-9597-0477
Pradeep NatarajanBroad Institute of Harvard and MIT, Cambridge, MA.ORCID 0000-0001-8402-7435
Benjamin L EbertDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA.ORCID 0000-0003-0197-5451
Broad Institute · USDana-Farber Cancer Institute · USBeth Israel Deaconess Medical Center · USThe University of Queensland · AUBrigham and Women's Hospital · USHarvard University · USKing's College London · GBStanford University · USVanderbilt University · US

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
RISK FACTORS FOR VERTEBRAL FRACTURE AND BONE LOSSR01AR041398 · NIAMS · RHODE ISLAND HOSPITAL (PROVIDENCE, RI) · PI KIEL, DOUGLAS P. · 1991 to 2025
$16.1M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2017 to 2021
$10.6M
Tyrosine Kinases, Serine-Threonine Kinases,&Phosophatases in PathogenesisP01CA108631 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BERRY, DONALD A · 2005 to 2009
$9.7M
Training Program in Molecular HematologyT32HL116324 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI NANCY BERLINER · 2013 to 2026
$7.4M
Functional Genomic Dissection of Refractory AnemiaR01HL082945 · NHLBI · DANA-FARBER CANCER INSTITUTE · PI EBERT, BENJAMIN LEVINE · 2005 to 2022
$6.8M
The role of clonal hematopoiesis in the development and therapy of myeloid malignanciesR35CA253125 · NCI · DANA-FARBER CANCER INST · PI EBERT, BENJAMIN LEVINE · 2020 to 2024
$4.9M
The role of salt inducible kinases in parathyroid hormone action in boneR01DK116716 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Marc Nathan Wein · 2018 to 2026
$3.8M
Clonal hematopoiesis in human aging and diseaseDP2HL157540 · NHLBI · STANFORD UNIVERSITY · PI JAISWAL, SIDDHARTHA · 2020 to 2020
$2.4M
Talking Back: leveraging dysfunctional osteoclasts to identify novel pathways of osteoclast-osteoblast communicationR21AR077768 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CHARLES, JULIA F · 2021 to 2022
$456k
Cancer Research UK C18281/A29019Damon Runyon Cancer Research Foundation PST-35-21Howard Hughes Medical InstituteMedical Research Council MC_PC_17228Medical Research Council MC_QA137853Medical Research Council MC_UU_12013/4NCI NIH HHS P01 CA066996NCI NIH HHS P01 CA108631NCI NIH HHS P50 CA206963NCI NIH HHS R35 CA253125NHLBI NIH HHS 5T32HL116324NHLBI NIH HHS DP2 HL157540NHLBI NIH HHS R01 HL082945NHLBI NIH HHS T32 HL116324NIAMS NIH HHS R01 AR041398NIAMS NIH HHS R01AR041398NIAMS NIH HHS R21 AR077768NIAMS NIH HHS R21AR077768NIDDK NIH HHS R01 DK116716NIH HHS DP2-HL157540NIH HHS R01DK116716NIH HHS R01HL082945
6 · The paper itself

Abstract

Osteoporosis is caused by an imbalance of osteoclasts and osteoblasts, occurring in close proximity to hematopoietic cells in the bone marrow. Recurrent somatic mutations that lead to an expanded population of mutant blood cells is termed clonal hematopoiesis of indeterminate potential (CHIP). Analyzing exome sequencing data from the UK Biobank, we found CHIP to be associated with increased incident osteoporosis diagnoses and decreased bone mineral density. In murine models, hematopoietic-specific mutations in Dnmt3a, the most commonly mutated gene in CHIP, decreased bone mass via increased osteoclastogenesis. Dnmt3a-/- demethylation opened chromatin and altered activity of inflammatory transcription factors. Bone loss was driven by proinflammatory cytokines, including Irf3-NF-κB-mediated IL-20 expression from Dnmt3a mutant macrophages. Increased osteoclastogenesis due to the Dnmt3a mutations was ameliorated by alendronate or IL-20 neutralization. These results demonstrate a novel source of osteoporosis-inducing inflammation.

Indexed as

AdultAgedAlendronateAnimalsAntibodies, NeutralizingCell DifferentiationClonal HematopoiesisDNA Methyltransferase 3AFemaleHumansInterleukinsMaleMiceMice, KnockoutMiddle AgedOsteoclastsAlendronateAntibodies, NeutralizingDNA Methyltransferase 3ADNMT3A protein, humanDnmt3a protein, mouseinterleukin 20Interleukins

Identifiers

PMID34698806
PMCPMC8552148
OpenAlexW3208200442

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.