Evidence map›Paper›PMID 34698547›Full record

ArticlemSystems2021

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure.

Halie M Rando, Adam L MacLean, Alexandra J Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth Sell, John J Dziak, Lamonica Shinholster and 24 more

Erratum issuedAbstract read
In one paragraph

Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
  2. Immunoglobulin G and neutralizing antibody response after CoronaVac.Revista da Associacao Medica Brasileira (1992) · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. COVID-19 Molecular Pathophysiology: Acetylation of Repurposing Drugs.International journal of molecular sciences · 2022
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors.

Halie M RandoDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID 0000-0001-7688-1770
Adam L MacLeanDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, California, USA.
Alexandra J LeeDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Ronan LordanInstitute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID 0000-0001-9668-3368
Sandipan RayDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Telangana, India.ORCID 0000-0002-9960-5768
Vikas BansalBiomedical Data Science and Machine Learning Group, German Center for Neurodegenerative Diseases, Tübingen, Germany.
Ashwin N SkellyPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Elizabeth SellPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
John J DziakEdna Bennett Pierce Prevention Research Center, The Pennsylvania State University, University Park, Pennsylvania, USA.
Lamonica ShinholsterMercer University, Macon, Georgia, USA.
Lucy D'Agostino McGowanDepartment of Mathematics and Statistics, Wake Forest Universitygrid.241167.7, Winston-Salem, North Carolina, USA.
Marouen Ben GuebilaDepartment of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA.
Nils WellhausenDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Sergey KnyazevGeorgia State University, Atlanta, Georgia, USA.
Simina M BocaInnovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington, DC, USA.
Stephen CaponeSt. George's University School of Medicine, St. George's, Grenada.
Yanjun QiDepartment of Computer Science, University of Virginiagrid.27755.32, Charlottesville, Virginia, USA.
YoSon ParkDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
David MaiDepartment of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Yuchen SunDepartment of Computer Science, University of Virginiagrid.27755.32, Charlottesville, Virginia, USA.
Joel D BoerckelDepartment of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Christian BruefferDepartment of Clinical Sciences, Lund University, Lund, Sweden.
James Brian ByrdUniversity of Michigan School of Medicine, Ann Arbor, Michigan, USA.
Jeremy P KamilDepartment of Microbiology and Immunology, Louisiana State University Health Sciences Center Shreveport, Shreveport, Louisiana, USA.ORCID 0000-0001-8422-7656
Jinhui WangPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Ryan VelazquezAzimuth1, McLean, Virginia, USA.
Gregory L SzetoAllen Institute for Immunology, Seattle, Washington, USA.
John P BartonDepartment of Physics and Astronomy, University of California-Riverside, Riverside, California, USA.
Rishi Raj GoelInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Serghei MangulDepartment of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, California, USA.
Tiago LubianaDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
COVID-19 Review Consortium Vikas Bansal, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brueffer, James Brian Byrd, Stephen Capone, Shikta Das, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen,
Anthony GitterDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Casey S GreeneDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID 0000-0001-8713-9213

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007170 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BRASS, LAWRENCE F · 1985 to 2022
$54.0M
Network-based algorithms for target identification and drug repositioning from genetic associationsR01HG010067 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI GREENE, CASEY S · 2018 to 2022
$3.2M
A Novel Biomarker of Mineralocorticoid Receptor ActivationK23HL128909 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BYRD, JAMES BRIAN · 2016 to 2020
$972k
Fast GrantsGordon and Betty Moore Foundation (GBMF) GBMF 4552HHS | National Institutes of Health (NIH) K23HL128909HHS | National Institutes of Health (NIH) Medical Scientist Training Program T32 GM07170John W. and Jeanne M. Rowe Center for Research in VirologyNHGRI NIH HHS R01 HG010067NHLBI NIH HHS K23 HL128909NIGMS NIH HHS T32 GM007170University of Pennsylvania (Penn) Center for Global Genomics and Health Equity
6 · The paper itself

Abstract

The novel coronavirus SARS-CoV-2, which emerged in late 2019, has since spread around the world and infected hundreds of millions of people with coronavirus disease 2019 (COVID-19). While this viral species was unknown prior to January 2020, its similarity to other coronaviruses that infect humans has allowed for rapid insight into the mechanisms that it uses to infect human hosts, as well as the ways in which the human immune system can respond. Here, we contextualize SARS-CoV-2 among other coronaviruses and identify what is known and what can be inferred about its behavior once inside a human host. Because the genomic content of coronaviruses, which specifies the virus's structure, is highly conserved, early genomic analysis provided a significant head start in predicting viral pathogenesis and in understanding potential differences among variants. The pathogenesis of the virus offers insights into symptomatology, transmission, and individual susceptibility. Additionally, prior research into interactions between the human immune system and coronaviruses has identified how these viruses can evade the immune system's protective mechanisms. We also explore systems-level research into the regulatory and proteomic effects of SARS-CoV-2 infection and the immune response. Understanding the structure and behavior of the virus serves to contextualize the many facets of the COVID-19 pandemic and can influence efforts to control the virus and treat the disease.

Indexed as

COVID-19genomicsreviewviral pathogenesis

Identifiers

PMID34698547
PMCPMC8547481

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.