Evidence map›Paper›PMID 34697919›Full record

ArticleJournal of veterinary science2021

Next-generation sequencing for the genetic characterization of Maedi/Visna virus isolated from the northwest of China.

Ling Zhao, Liang Zhang, Xiaona Shi, Xujie Duan, Huiping Li, Shuying Liu

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Ling Zhao *College of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0002-6197-6408
Liang Zhang *College of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0003-2457-8125
Xiaona ShiCollege of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0002-5303-7507
Xujie DuanCollege of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0002-1574-6038
Huiping LiCollege of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0001-6935-434X
Shuying LiuCollege of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID https://orcid.org/0000-0002-5502-9578
Inner Mongolia Agricultural University · CN

Funding

Inner Mongolia Grassland Innovative Talent Team Project 20151031Inner Mongolia Technology Application Research Project 2019GG240National Natural Science Foundation of China 31760721National Natural Science Foundation of China 32072819
6 · The paper itself

Abstract

backgroundMaedi/Visna virus (MVV) is a contagious viral pathogen that causes considerable economic losses to the sheep industry worldwide.

objectivesIn China, MVV has been detected in several regions, but its molecular characteristics and genetic variations were not thoroughly investigated.

methodsTherefore, in this study, we conducted next-generation sequencing on an MVV strain obtained from northwest China to reveal its genetic evolution via phylogenetic analysis.

resultsA MVV strain obtained from Inner Mongolia (NM) of China was identified. Sequence analysis indicated that its whole-genome length is 9193 bp. Homology comparison of nucleotides between the NM strain and reference strains showed that the sequence homology of gag and env were 77.1%-86.8% and 67.7%-75.5%, respectively. Phylogenetic analysis revealed that the NM strain was closely related to the reference strains isolated from America, which belong to the A2 type. Notably, there were 5 amino acid insertions in variable region 4 and a highly variable motif at the C-terminal of the surface glycoprotein (SU5).

conclusionsThe present study is the first to show the whole-genome sequence of an MVV obtained from China. The detailed analyses provide essential information for understanding the genetic characteristics of MVV, and the results enrich the MVV library.

Indexed as

Pneumonia, Progressive Interstitial, of SheepSheep DiseasesVisna-maedi virusAnimalsChinaHigh-Throughput Nucleotide SequencingPhylogenySheepMaedi/Visna virusnext-generation sequencingphylogenetic analysissheep lung

Identifiers

PMID34697919
PMCPMC8636652
OpenAlexW3190146953

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.