Evidence map›Paper›PMID 34697784›Full record

ArticleJournal of microbiology (Seoul, Korea)2021

Adaptation of Pseudomonas helmanticensis to fat hydrolysates and SDS: fatty acid response and aggregate formation.

Ilya N Zubkov, Anatoly P Nepomnyshchiy, Vadim D Kondratyev, Pavel N Sorokoumov, Konstantin V Sivak, Edward S Ramsay, Sergey M Shishlyannikov

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Article in Journal of microbiology (Seoul, Korea), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ilya N ZubkovAll-Russian Research Institute for Food Additives, Branch of V. M. Gorbatov Federal Research Center for Food Systems (RAS), 55 Liteyny Prospekt, Saint Petersburg, 191014, Russia. ilyagosldstein@gmail.com.
Anatoly P NepomnyshchiyAll-Russian Research Institute for Food Additives, Branch of V. M. Gorbatov Federal Research Center for Food Systems (RAS), 55 Liteyny Prospekt, Saint Petersburg, 191014, Russia.
Vadim D KondratyevAll-Russian Research Institute for Food Additives, Branch of V. M. Gorbatov Federal Research Center for Food Systems (RAS), 55 Liteyny Prospekt, Saint Petersburg, 191014, Russia.
Pavel N SorokoumovAll-Russian Research Institute for Food Additives, Branch of V. M. Gorbatov Federal Research Center for Food Systems (RAS), 55 Liteyny Prospekt, Saint Petersburg, 191014, Russia.
Konstantin V SivakSmorodintsev Research Institute of Influenza, 15/17 Ulitsa Professora Popova, Saint Petersburg, 4197022, Russia.
Edward S RamsaySmorodintsev Research Institute of Influenza, 15/17 Ulitsa Professora Popova, Saint Petersburg, 4197022, Russia.
Sergey M ShishlyannikovAll-Russian Research Institute for Food Additives, Branch of V. M. Gorbatov Federal Research Center for Food Systems (RAS), 55 Liteyny Prospekt, Saint Petersburg, 191014, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An essential part of designing any biotechnological process is examination of the physiological state of producer cells in different phases of cultivation. The main marker of a bacterial cell's state is its fatty acid (FA) profile, reflecting membrane lipid composition. Consideration of FA composition enables assessment of bacterial responses to cultivation conditions and helps biotechnologists understand the most significant factors impacting cellular metabolism. In this work, soil SDS-degrading Pseudomonas helmanticensis was studied at the fatty acid profile level, including analysis of rearrangement between planktonic and aggregated forms. The set of substrates included fat hydrolysates, SDS, and their mixtures with glucose. Such media are useful in bioplastic production since they can help incrementally lower overall costs. Conventional gas chromatography-mass spectrometry was used for FA analysis. Acridine orange-stained aggregates were observed by epifluorescence microscopy. The bacterium was shown to change fatty acid composition in the presence of hydrolyzed fats or SDS. These changes seem to be driven by the depletion of metabolizable substrates in the culture medium. Cell aggregation has also been found to be a defense strategy, particularly with anionic surfactant (SDS) exposure. It was shown that simple fluidity indices (such as saturated/unsaturated FA ratios) do not always sufficiently characterize a cell's physiological state, and morphological examination is essential in cases where complex carbon sources are used.

Indexed as

Adaptation, PhysiologicalLipid MetabolismCulture MediaFatty AcidsGlucoseHydrolysisPseudomonasSodium Dodecyl SulfateCulture MediaFatty AcidsGlucoseSodium Dodecyl Sulfateaggregationhydrolysed fatsmembrane fluidityPseudomonassodium dodecyl sulphate

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.