Evidence map›Paper›PMID 34697629›Full record

ArticleJournal of biochemistry2022

GlcNAc-Asn is a biomarker for NGLY1 deficiency.

William F Mueller, Lei Zhu, Brandon Tan, Selina Dwight, Brendan Beahm, Matt Wilsey, Thomas Wechsler, Justin Mak, Tina Cowan, Jake Pritchett and 2 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Journal of biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

William F MuellerGrace Science, LLC - Menlo Park, CA, USA 94025.
Lei ZhuGrace Science, LLC - Menlo Park, CA, USA 94025.
Brandon TanGrace Science, LLC - Menlo Park, CA, USA 94025.
Selina DwightGrace Science, LLC - Menlo Park, CA, USA 94025.
Brendan BeahmGrace Science, LLC - Menlo Park, CA, USA 94025.
Matt WilseyGrace Science, LLC - Menlo Park, CA, USA 94025.
Thomas WechslerGrace Science, LLC - Menlo Park, CA, USA 94025.
Justin MakStanford University - Stanford, CA, USA 94305.
Tina CowanStanford University - Stanford, CA, USA 94305.
Jake PritchettIntegrated Analytical Solutions, Inc. - Berkeley, CA, USA 94710.
Eric TaylorIntegrated Analytical Solutions, Inc. - Berkeley, CA, USA 94710.
Brett E CrawfordGrace Science, LLC - Menlo Park, CA, USA 94025.
Grace (United States) · USStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Substrate-derived biomarkers are necessary in slowly progressing monogenetic diseases caused by single-enzyme deficiencies to identify affected patients and serve as surrogate markers for therapy response. N-glycanase 1 (NGLY1) deficiency is an ultra-rare autosomal recessive disorder characterized by developmental delay, peripheral neuropathy, elevated liver transaminases, hyperkinetic movement disorder and (hypo)-alacrima. We demonstrate that N-acetylglucosamine-asparagine (GlcNAc-Asn; GNA), is the analyte most closely associated with NGLY1 deficiency, showing consistent separation in levels between patients and controls. GNA accumulation is directly linked to the absence of functional NGLY1, presenting strong potential for its use as a biomarker. In agreement, a quantitative liquid chromatography with tandem mass spectrometry assay, developed to assess GNA from 3 to 3000 ng/ml, showed that it is conserved as a marker for loss of NGLY1 function in NGLY1-deficient cell lines, rodents (urine, cerebrospinal fluid, plasma and tissues) and patients (plasma and urine). Elevated GNA levels differentiate patients from controls, are stable over time and correlate with changes in NGLY1 activity. GNA as a biomarker has the potential to identify and validate patients with NGLY1 deficiency, act as a direct pharmacodynamic marker and serve as a potential surrogate endpoint in clinical trials.

Indexed as

AsparagineCongenital Disorders of GlycosylationBiomarkersHumansPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseAsparagineBiomarkersPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasebiomarkerGlcNAc-AsnGNANGLY1 deficiencyN-glycanase 1

Identifiers

PMID34697629
PMCPMC8863169
OpenAlexW3211178975

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.