Evidence map›Paper›PMID 34697384›Full record

ArticleCommunications biology2021

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice.

Jian You Wang, Saleh Alseekh, Tingting Xiao, Abdugaffor Ablazov, Leonardo Perez de Souza, Valentina Fiorilli, Marita Anggarani, Pei-Yu Lin, Cristina Votta, Mara Novero and 6 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

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  14. Disruption of the riceProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 5 countries.

Jian You Wang *The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.ORCID 0000-0003-0779-474X
Saleh Alseekh *Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.ORCID 0000-0003-2067-5235
Tingting XiaoThe Laboratory of Plant Cell and Developmental Biology (LPCDB), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
Abdugaffor AblazovThe BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
Leonardo Perez de SouzaMax-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.ORCID 0000-0002-7200-8808
Valentina FiorilliDepartment of Life Sciences and Systems Biology, University of Turin, Turin, Italy.
Marita AnggaraniInstitute of Plant and Microbial Biology, Academia Sinica, No. 128, Section 2, Yien-Chu-Yuan Road, Taipei, 11529, Taiwan.
Pei-Yu LinThe BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
Cristina VottaDepartment of Life Sciences and Systems Biology, University of Turin, Turin, Italy.
Mara NoveroDepartment of Life Sciences and Systems Biology, University of Turin, Turin, Italy.ORCID 0000-0001-7412-8750
Muhammad JamilThe BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.ORCID 0000-0003-0221-518X
Luisa LanfrancoDepartment of Life Sciences and Systems Biology, University of Turin, Turin, Italy.
Yue-Ie C HsingInstitute of Plant and Microbial Biology, Academia Sinica, No. 128, Section 2, Yien-Chu-Yuan Road, Taipei, 11529, Taiwan.
Ikram BlilouThe Laboratory of Plant Cell and Developmental Biology (LPCDB), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
Alisdair R FernieMax-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.ORCID 0000-0001-9000-335X
Salim Al-BabiliThe BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia. salim.babili@kaust.edu.sa.ORCID 0000-0003-4823-2882
King Abdullah University of Science and Technology · SAUniversity of Turin · ITInstitute of Plant and Microbial Biology, Academia Sinica · TWMax Planck Institute of Molecular Plant Physiology · DECenter of Plant Systems Biology and Biotechnology · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The apocarotenoid zaxinone promotes growth and suppresses strigolactone biosynthesis in rice. To shed light on the mechanisms underlying its growth-promoting effect, we employed a combined omics approach integrating transcriptomics and metabolomics analysis of rice seedlings treated with zaxinone, and determined the resulting changes at the cellular and hormonal levels. Metabolites as well as transcripts analysis demonstrate that zaxinone application increased sugar content and triggered glycolysis, the tricarboxylic acid cycle and other sugar-related metabolic processes in rice roots. In addition, zaxinone treatment led to an increased root starch content and induced glycosylation of cytokinins. The transcriptomic, metabolic and hormonal changes were accompanied by striking alterations of roots at cellular level, which showed an increase in apex length, diameter, and the number of cells and cortex cell layers. Remarkably, zaxinone did not affect the metabolism of roots in a strigolactone deficient mutant, suggesting an essential role of strigolactone in the zaxinone growth-promoting activity. Taken together, our results unravel zaxinone as a global regulator of the transcriptome and metabolome, as well as of hormonal and cellular composition of rice roots. Moreover, they suggest that zaxinone promotes rice growth most likely by increasing sugar uptake and metabolism, and reinforce the potential of this compound in increasing rice performance.

Indexed as

MetabolomeTranscriptomeCarotenoidsGene Expression ProfilingMetabolomicsOryzaPlant Growth RegulatorsSeedlingsCarotenoidsPlant Growth Regulators

Identifiers

PMID34697384
PMCPMC8545949
OpenAlexW3209658415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.