Evidence map›Paper›PMID 34697355›Full record

ArticleScientific reports2021

Identification and genome analysis of a novel picornavirus from captive belugas (Delphinapterus leucas) in China.

Gaoyu Wang, Yi Huang, Weijia Zhang, Ruoyan Peng, Jun Luo, Sisi Liu, Shijie Bai, Xiaoyuan Hu, Zhiqiang Wu, Fan Yang and 11 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Gaoyu Wang *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Yi Huang *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Weijia Zhang *Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Beijing, China.
Ruoyan Peng *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Jun LuoDalian Sun Asia Tourism Holding Co. Ltd., Dalian, 116023, China.
Sisi LiuQingdao Polar Haichang Ocean Park, Qingdao, 266003, China.
Shijie BaiInstitute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Beijing, China.
Xiaoyuan HuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Zhiqiang WuNHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100005, China.
Fan YangNHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100005, China.
Shu ShenState Key Laboratory of Virology and National Virus Resource Center, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China.
Yun ZhangKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Chuanning TangKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Xiuji CuiKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Lina NiuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Gang LuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Songhai LiInstitute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Beijing, China.
Fei DengState Key Laboratory of Virology and National Virus Resource Center, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China.
Peijun ZhangInstitute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Beijing, China. pjzhang@idsse.ac.cn.
Jiang DuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China. dujiangemail@163.com.
Feifei YinKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China. yinfeifeiff@163.com.
University of Hong Kong · HKHainan Medical University · CNChinese Academy of Sciences · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNInstitute of Deep-Sea Science and Engineering · CNChina Tourism Academy · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The discovery of new viruses is important for predicting their potential threats to the health of humans and other animals. A novel picornavirus was identified from oral, throat, and anal swab samples collected from belugas (Delphinapterus leucas), from Dalian Sun Asia Tourism Holding Co., China, between January and December 2018, using a metagenomics approach. The genome of this novel PicoV-HMU-1 strain was 8197 nucleotides (nt) in length, with a open reading frame (from 1091 to 8074 nt) that encoded a polyprotein precursor of 2328 amino acids. Moreover, the genomic length and GC content of PicoV-HMU-1 were within the ranges found in other picornaviruses, and the genome organization was also similar. Nevertheless, PicoV-HMU-1 had a lower amino acid identity and distinct host species compared with other members of the Picornaviridae family. Phylogenetic trees were constructed based on the P1 and 3D amino acid sequences of PicoV-HMU-1 along with representative members of the Picornaviridae family, which showed that PicoV-HMU-1 was related to unclassified bat picornaviruses groups. These findings suggest that the PicoV-HMU-1 strain represents a potentially novel genus of picornavirus. These data can enhance our understanding of the picornavirus genetic diversity and evolution.

Indexed as

Genome, ViralGenomicsAnimalsBeluga WhaleChinaComputational BiologyHigh-Throughput Nucleotide SequencingMetagenomicsMolecular Sequence AnnotationNucleic Acid ConformationPhylogenyPicornaviridaePicornaviridae InfectionsPrevalenceRNA, ViralRNA, Viral

Identifiers

PMID34697355
PMCPMC8549006
OpenAlexW3210366482

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.