Evidence map›Paper›PMID 34696517›Full record

ArticleViruses2021

Identification and Characterization of Swine Influenza Virus H1N1 Variants Generated in Vaccinated and Nonvaccinated, Challenged Pigs.

Álvaro López-Valiñas, Marta Sisteré-Oró, Sergi López-Serrano, Laura Baioni, Ayub Darji, Chiara Chiapponi, Joaquim Segalés, Llilianne Ganges, José I Núñez

Abstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Álvaro López-ValiñasCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.
Marta Sisteré-OróCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.ORCID 0000-0003-0214-6348
Sergi López-SerranoCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.ORCID 0000-0002-0968-7713
Laura BaioniOIE Reference Laboratory for Swine Influenza Virus, Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia-Romagna, 25124 Brescia, Italy.
Ayub DarjiCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.
Chiara ChiapponiOIE Reference Laboratory for Swine Influenza Virus, Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia-Romagna, 25124 Brescia, Italy.ORCID 0000-0001-8808-4680
Joaquim SegalésCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.ORCID 0000-0002-1539-7261
Llilianne GangesCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.ORCID 0000-0002-8644-3560
José I NúñezCentre de Recerca en Sanitat Animal (CReSA), Institut de Recerca en Tecnologies Agroalimentaries (IRTA), 08193 Barcelona, Spain.ORCID 0000-0001-9890-7695

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Influenza viruses represent a continuous threat to both animal and human health. The 2009 H1N1 A influenza pandemic highlighted the importance of a swine host in the adaptation of influenza viruses to humans. Nowadays, one of the most extended strategies used to control swine influenza viruses (SIVs) is the trivalent vaccine application, whose formulation contains the most frequently circulating SIV subtypes H1N1, H1N2, and H3N2. These vaccines do not provide full protection against the virus, allowing its replication, evolution, and adaptation. To better understand the main mechanisms that shape viral evolution, here, the SIV intra-host diversity was analyzed in samples collected from both vaccinated and nonvaccinated animals challenged with the H1N1 influenza A virus. Twenty-eight whole SIV genomes were obtained by next-generation sequencing, and differences in nucleotide variants between groups were established. Substitutions were allocated along all influenza genetic segments, while the most relevant nonsynonymous substitutions were allocated in the NS1 protein on samples collected from vaccinated animals, suggesting that SIV is continuously evolving despite vaccine application. Moreover, new viral variants were found in both vaccinated and nonvaccinated pigs, showing relevant substitutions in the HA, NA, and NP proteins, which may increase viral fitness under field conditions.

Indexed as

AnimalsDisease OutbreaksInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H5N2 SubtypeInfluenza VaccinesOrthomyxoviridae InfectionsPhylogenySwineSwine DiseasesInfluenza Vaccineshemagglutinin (HA)neuraminidase (NA)next-generation sequencingnonstructural protein (NS)nucleoprotein (NP)single nucleotide variants (SNVs)swine influenza virus (SIV)

Identifiers

PMID34696517
PMCPMC8539973

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.