Evidence map›Paper›PMID 34694336›Full record

ArticleThe Journal of cell biology2022

Cell cycle-independent integration of stress signals by Xbp1 promotes Non-G1/G0 quiescence entry.

Orlando Argüello-Miranda, Ashley J Marchand, Taylor Kennedy, Marielle A X Russo, Jungsik Noh

Abstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Microbial life in slow and stopped lanes.Trends in microbiology · 2024
    Review
  9. Article
  10. Article
  11. Quiescence inAnnual review of genetics · 2022
    Review
  12. Review
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Orlando Argüello-MirandaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX.ORCID 0000-0002-0579-4650
Ashley J MarchandDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX.
Taylor KennedyDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX.ORCID 0000-0001-6260-5337
Marielle A X RussoDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX.ORCID 0000-0001-6147-7871
Jungsik NohLyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX.ORCID 0000-0003-1823-8589

Funding

Systems biology of quiescence entryK99GM135487 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ARGÜELLO-MIRANDA, ORLANDO · 2020 to 2021
$192k
NIGMS NIH HHS K99 GM135487NIH HHS K99GM135487
6 · The paper itself

Abstract

Cellular quiescence is a nonproliferative state required for cell survival under stress and during development. In most quiescent cells, proliferation is stopped in a reversible state of low Cdk1 kinase activity; in many organisms, however, quiescent states with high-Cdk1 activity can also be established through still uncharacterized stress or developmental mechanisms. Here, we used a microfluidics approach coupled to phenotypic classification by machine learning to identify stress pathways associated with starvation-triggered high-Cdk1 quiescent states in Saccharomyces cerevisiae. We found that low- and high-Cdk1 quiescent states shared a core of stress-associated processes, such as autophagy, protein aggregation, and mitochondrial up-regulation, but differed in the nuclear accumulation of the stress transcription factors Xbp1, Gln3, and Sfp1. The decision between low- or high-Cdk1 quiescence was controlled by cell cycle-independent accumulation of Xbp1, which acted as a time-delayed integrator of the duration of stress stimuli. Our results show how cell cycle-independent stress-activated factors promote cellular quiescence outside G1/G0.

Indexed as

Cell CycleSignal TransductionStress, PhysiologicalCell NucleusCell ProliferationMicrofluidicsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsXBP1 protein, S cerevisiae

Identifiers

PMID34694336
PMCPMC8548912

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.