ArticleNational science review2020
Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations.
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Article in National science review, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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43 citing papers in PubMed.
- Ancient mitogenomes reveal the genetic relationship among extinct and extant water buffaloes.iScience · 2026Article
- Exploring Genomic Variability in the Mediterranean Buffalo Breed: A Step Towards Custom SNP Array.Animals : an open access journal from MDPI · 2026Article
- X-LDR: an atlas of linkage disequilibrium across species.Genome biology · 2025Article
- A Strategy for Single-Run Sequencing of the Water Buffalo Genome: (II) Fast One-Step Assembly of Highly Continuous Chromosome Sequences.Animals : an open access journal from MDPI · 2025Article
- Maternal origins and genetic diversity of Sabahan swamp buffalo using mitochondrial cytochrome b gene.Scientific reports · 2025Article
- Development of a 5K Liquid-Phase Genome-Wide Breeding Chip for Xinglong Buffalo.Animals : an open access journal from MDPI · 2025Article
- Transcriptomic and Proteomic Insights Into Buffalo Milk Fat Synthesis and the Role of IGFBP4 in BMECs.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025Article
- Buffalo milk: nutritional composition, bioactive properties, and advances in processing technologies-a comprehensive review.Food chemistry: X · 2025Review
- Integrated multi-omics analysis and functional validation uncovers RPL26 roles in regulating growth traits of Asian water buffaloes (Bubalus bubalis).BMC genomics · 2025Article
- Molecular Characteristics and Role of BuffaloGenes · 2025Article
- A comprehensive water buffalo pangenome reveals extensive structural variation linked to population-specific signatures of selection.GigaScience · 2025Article
- A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis).Scientific data · 2024Article
- Whole-genome sequencing reveals genetic structure and adaptive genes in Nepalese buffalo breeds.BMC genomics · 2024Article
- The genome landscape of the Xinglong buffalo.BMC genomics · 2024Article
- Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes.Mammalian genome : official journal of the International Mammalian Genome Society · 2024Article
- Review
- When Livestock Genomes Meet Third-Generation Sequencing Technology: From Opportunities to Applications.Genes · 2024Review
- Article
- Disentangling river and swamp buffalo genetic diversity: initial insights from the 1000 Buffalo Genomes Project.GigaScience · 2024Article
- Age-related compositional and functional changes in the adult and breastfed buffalo rumen microbiome.Frontiers in microbiology · 2024Article
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Authors and funding
37 authors.
Xier LuoState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Yu ZhouState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Bing ZhangCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
Yi ZhangNational Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing 100083, China.ORCID 0000-0003-1642-5890
Xiaobo WangState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Tong FengState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.ORCID 0000-0002-6056-0590
Zhipeng LiState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Kuiqing CuiState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Zhiqiang WangState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Chan LuoState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Hui LiState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Yanfei DengState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Fenghua LuState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.ORCID 0000-0003-2906-6372
Jianlin HanCAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Yongwang MiaoFaculty of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Huaming MaoFaculty of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Xiaoyan YiGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Cheng AiGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Shigang WuGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Alun LiGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Zhichao WuGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Zijun ZhuoGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Do Da GiangState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Bikash MitraCellular Immunology Lab, Department of Zoology, University of North Bengal, Siligun 734013, India.
Mohammad Farhad VahidiAnimal Biotechnology Department, Agricultural Biotechnology Research Institute of Iran-North Region, Agricultural Research, Education and Extension Organization, Rasht 999067, Iran.
Shahid MansoorNational Institute for Biotechnology and Genetic Engineering, Faisalabad 999010, Pakistan.
Sahar Ahmed Al-BayattiAnimal Genetic Sources Department, Directorate of Animal Resources, Ministry of Agriculture, Baghdad 19207, Iraq.
Eka Meutia SariDepartment of Animal Science, Faculty of Agriculture, Syiah Kuala University, Darussalam-Banda Aceh 23111, Indonesia.
Neena Amatya GorkhaliAnimal Breeding Division, National Animal Science Research Institute, Nepal Agriculture Research Council, Khumaltar 999098, Nepal.
Sigit PrastowoAnimal Science Department Universitas Sebelas Maret, Surakarta 999006, Indonesia.
Laiba ShafiqueState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Guoyou YeInternational Rice Research Institute, Manila 999005, Philippines.
Qian QianGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.ORCID 0000-0002-0349-4937
Baoshan ChenState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Deshun ShiState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Jue RuanGuangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Qingyou LiuState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning 530005, China.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals (132 swamp buffaloes and 98 river buffaloes) sampled from across Asia and Europe. Beyond the many actionable insights that our study revealed about the domestication, basic physiology and breeding of buffalo, we made the striking discovery that the divergent domestication traits between swamp and river buffaloes can be explained with recent selections of genes on social behavior, digestion metabolism, strengths and milk production.
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