Evidence map›Paper›PMID 34692022›Full record

ArticleNational science review2020

Rapid phenotypic evolution with shallow genomic differentiation during early stages of high elevation adaptation in Eurasian Tree Sparrows.

Yanhua Qu, Chunhai Chen, Ying Xiong, Huishang She, Yong E Zhang, Yalin Cheng, Shane DuBay, Dongming Li, Per G P Ericson, Yan Hao and 12 more

Open access · hybridAbstract read
In one paragraph

Article in National science review, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 4 countries.

Yanhua QuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Chunhai ChenBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Ying XiongKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Huishang SheKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Yong E ZhangKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Yalin ChengKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Shane DuBayCommittee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, USA.
Dongming LiKey Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China.
Per G P EricsonDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, SE-104 05 Stockholm, Sweden.
Yan HaoKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Hongyuan WangCollege of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.
Hongfeng ZhaoCollege of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.
Gang SongKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Hailin ZhangBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Ting YangChina National GeneBank, BGI-Shenzhen, Shenzhen 518120, China.
Chi ZhangBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Liping LiangBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Tianyu WuBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Jinyang ZhaoBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Qiang GaoBGI Genomics, BGI-Shenzhen, Shenzhen 518084, China.
Weiwei ZhaiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Fumin LeiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
BGI Group (China) · CNChinese Academy of Sciences · CNInstitute of Zoology · CNBGI GenomicsShaanxi Normal University · CNChina National GeneBank · CNHebei Normal University · CNSwedish Museum of Natural History · SEUniversity of Chicago · USUniversity of Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Known as the 'third polar region', the Qinghai-Tibet Plateau represents one of the harshest highland environments in the world and yet a number of organisms thrive there. Previous studies of birds, animals and humans have focused on well-differentiated populations in later stages of phenotypic divergence. The adaptive processes during the initial phase of highland adaptation remain poorly understood. We studied a human commensal, the Eurasian Tree Sparrow, which has followed human agriculture to the Qinghai-Tibet Plateau. Despite strong phenotypic differentiation at multiple levels, in particular in muscle-related phenotypes, highland and lowland populations show shallow genomic divergence and the colonization event occurred within the past few thousand years. In a one-month acclimation experiment investigating phenotypic plasticity, we exposed adult lowland tree sparrows to a hypoxic environment and did not observe muscle changes. Through population genetic analyses, we identified a signature of polygenic adaptation, whereby shifts in allele frequencies are spread across multiple loci, many of which are associated with muscle-related processes. Our results reveal a case of positive selection in which polygenic adaptation appears to drive rapid phenotypic evolution, shedding light on early stages of adaptive evolution to a novel environment.

Indexed as

de novo genomeearly stage adaptationhigh elevationmuscle phenotypespolygenic adaptationregulatory evolution

Identifiers

PMID34692022
PMCPMC8289047
OpenAlexW2972490887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.