Evidence map›Paper›PMID 34691113›Full record

ArticleFrontiers in plant science2021

PacBio and Illumina RNA Sequencing Identify Alternative Splicing Events in Response to Cold Stress in Two Poplar Species.

Jingli Yang, Wanqiu Lv, Liying Shao, Yanrui Fu, Haimei Liu, Chengjun Yang, Aihua Chen, Xieyu Xie, Zhiwei Wang, Chenghao Li

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jingli YangState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Wanqiu LvState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Liying ShaoState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Yanrui FuState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Haimei LiuBiology Group, Jiamusi No.1 High School, Jiamusi, China.
Chengjun YangState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Aihua ChenEconomic Forest Laboratory, Mudanjiang Branch of Heilongjiang Academy of Forestry, Mudanjiang, China.
Xieyu XieState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Zhiwei WangState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Chenghao LiState Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, China.
Northeast Forestry University · CNHeilongjiang Academy of Forestry · CNJiamusi University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotes, alternative splicing (AS) is a crucial regulatory mechanism that modulates mRNA diversity and stability. The contribution of AS to stress is known in many species related to stress, but the posttranscriptional mechanism in poplar under cold stress is still unclear. Recent studies have utilized the advantages of single molecular real-time (SMRT) sequencing technology from Pacific Bioscience (PacBio) to identify full-length transcripts. We, therefore, used a combination of single-molecule long-read sequencing and Illumina RNA sequencing (RNA-Seq) for a global analysis of AS in two poplar species (

Indexed as

alternative splicingcold stressPacBioPopulus trichocarpaPopulus ussuriensisRNA-Seq

Identifiers

PMID34691113
PMCPMC8529222
OpenAlexW3207961596

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.