Evidence map›Paper›PMID 34691074›Full record

ArticleFrontiers in immunology2021

Similarities and Differences in the Acute-Phase Response to SARS-CoV-2 in Rhesus Macaques and African Green Monkeys.

Celeste Coleman, Lara A Doyle-Meyers, Kasi E Russell-Lodrigue, Nadia Golden, Breanna Threeton, Kejing Song, Genevieve Pierre, Carl Baribault, Rudolf P Bohm, Nicholas J Maness and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. SARS-CoV-2 Infection and Lung Regeneration.Clinical microbiology reviews · 2022
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Celeste ColemanDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Lara A Doyle-MeyersDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Kasi E Russell-LodrigueDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Nadia GoldenDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Breanna ThreetonDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Kejing SongCenter for Translational Research in Infection and Inflammation, Department of Pediatrics and Department of Medicine, Tulane University School of Medicine, New Orleans, LA, United States.
Genevieve PierreCenter for Translational Research in Infection and Inflammation, Department of Pediatrics and Department of Medicine, Tulane University School of Medicine, New Orleans, LA, United States.
Carl BaribaultCenter for Research & Scientific Computing, Tulane University Information Technology, New Orleans, LA, United States.
Rudolf P BohmDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Nicholas J ManessDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Jay K KollsCenter for Translational Research in Infection and Inflammation, Department of Pediatrics and Department of Medicine, Tulane University School of Medicine, New Orleans, LA, United States.
Jay RappaportDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Joseph C MuddDepartment of Immunology and Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Tulane University · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Mechanisms and Therapeutic Targeting of CD4 Down regulation in African Green MonkeysR21OD031229 · OD · TULANE UNIVERSITY OF LOUISIANA · PI MUDD, JOSEPH CHRISTOPHER · 2021 to 2022
$611k
NIH HHS P51 OD011104NIH HHS R21 OD031229
6 · The paper itself

Abstract

Understanding SARS-CoV-2 immune pathology is critical for the development of effective vaccines and treatments. Here, we employed unbiased serial whole-blood transcriptome profiling by weighted gene network correlation analysis (WGCNA) at pre-specified timepoints of infection to understand SARS-CoV-2-related immune alterations in a cohort of rhesus macaques (RMs) and African green monkeys (AGMs) presenting with varying degrees of pulmonary pathology. We found that the bulk of transcriptional changes occurred at day 3 post-infection and normalized to pre-infection levels by 3 weeks. There was evidence of coordination of transcriptional networks in blood (defined by WGCNA) and the nasopharyngeal SARS-CoV-2 burden as well as the absolute monocyte count. Pathway analysis of gene modules revealed prominent regulation of type I and type II interferon stimulated genes (ISGs) in both RMs and AGMs, with the latter species exhibiting a greater breadth of ISG upregulation. Notably, pathways relating to neutrophil degranulation were enriched in blood of SARS-CoV-2 infected AGMs, but not RMs. Our results elude to hallmark similarities as well as differences in the RM and AGM acute response to SARS-CoV-2 infection, and may help guide the selection of particular NHP species in modeling aspects of COVID-19 disease outcome.

Indexed as

Cell DegranulationAnimalsChlorocebus aethiopsCOVID-19Disease Models, AnimalMacaca mulattaNeutrophilsSARS-CoV-2Species SpecificityAfrican green monkeyCOVID-19interferonneutrophil (PMN)systems biology

Identifiers

PMID34691074
PMCPMC8527883
OpenAlexW3201720850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.