Evidence map›Paper›PMID 34689378›Full record

ArticleCancer science2022

Prediction of the differences in tumor mutation burden between primary and metastatic lesions by radiogenomics.

Isamu Hoshino, Hajime Yokota, Yosuke Iwatate, Yasukuni Mori, Naoki Kuwayama, Fumitaka Ishige, Makiko Itami, Takashi Uno, Yuki Nakamura, Yasutoshi Tatsumi and 2 more

Abstract read
In one paragraph

Article in Cancer science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Isamu HoshinoDivision of Gastroenterological Surgery, Chiba Cancer Center, Chiba, Japan.ORCID https://orcid.org/0000-0002-8156-1752
Hajime YokotaDepartment of Diagnostic Radiology and Radiation Oncology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yosuke IwatateDivision of Hepato-Biliary-Pancreatic Surgery, Chiba Cancer Center, Chiba, Japan.
Yasukuni MoriFaculty of Engineering, Graduate School of Engineering, Chiba University, Chiba, Japan.
Naoki KuwayamaDivision of Gastroenterological Surgery, Chiba Cancer Center, Chiba, Japan.
Fumitaka IshigeDivision of Hepato-Biliary-Pancreatic Surgery, Chiba Cancer Center, Chiba, Japan.
Makiko ItamiDivision of Clinical Pathology, Chiba Cancer Center, Chiba, Japan.
Takashi UnoDepartment of Diagnostic Radiology and Radiation Oncology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yuki NakamuraLaboratory of Cancer Genetics, Chiba Cancer Center Research Institute, Chiba Cancer Center, Chiba, Japan.
Yasutoshi TatsumiLaboratory of Cancer Genetics, Chiba Cancer Center Research Institute, Chiba Cancer Center, Chiba, Japan.ORCID https://orcid.org/0000-0003-2646-7410
Osamu ShimozatoLaboratory of Cancer Genetics, Chiba Cancer Center Research Institute, Chiba Cancer Center, Chiba, Japan.
Hiroki NagaseLaboratory of Cancer Genetics, Chiba Cancer Center Research Institute, Chiba Cancer Center, Chiba, Japan.ORCID https://orcid.org/0000-0002-3992-5399

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tumor mutational burden (TMB) is gaining attention as a biomarker for responses to immune checkpoint inhibitors in cancer patients. In this study, we evaluated the status of TMB in primary and liver metastatic lesions in patients with colorectal cancer (CRC). In addition, the status of TMB in primary and liver metastatic lesions was inferred by radiogenomics on the basis of computed tomography (CT) images. The study population included 24 CRC patients with liver metastases. DNA was extracted from primary and liver metastatic lesions obtained from the patients and TMB values were evaluated by next-generation sequencing. The TMB value was considered high when it equaled to or exceeded 10/100 Mb. Radiogenomic analysis of TMB was performed by machine learning using CT images and the construction of prediction models. In 7 out of 24 patients (29.2%), the TMB status differed between the primary and liver metastatic lesions. Radiogenomic analysis was performed to predict whether TMB status was high or low. The maximum values for the area under the receiver operating characteristic curve were 0.732 and 0.812 for primary CRC and CRC with liver metastasis, respectively. The sensitivity, specificity, and accuracy of the constructed models for TMB status discordance were 0.857, 0.600, and 0.682, respectively. Our results suggested that accurate inference of the TMB status is possible using radiogenomics. Therefore, radiogenomics could facilitate the diagnosis, treatment, and prognosis of patients with CRC in the clinical setting.

Indexed as

AgedAged, 80 and overArea Under CurveColorectal NeoplasmsDelayed DiagnosisFemaleGenomicsHigh-Throughput Nucleotide SequencingHumansLiver NeoplasmsMachine LearningMaleMiddle AgedMutationPrognosisRadiographic Image Interpretation, Computer-Assistedcolorectal cancerheterogeneitymetastasisradiogenomicstumor mutational burden

Identifiers

PMID34689378
PMCPMC8748253

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.