Evidence map›Paper›PMID 34689318›Full record

ArticleBrain imaging and behavior2022

The colors of our brain: an integrated approach for dimensionality reduction and explainability in fMRI through color coding (i-ECO).

Livio Tarchi, Stefano Damiani, Paolo La Torraca Vittori, Simone Marini, Nelson Nazzicari, Giovanni Castellini, Tiziana Pisano, Pierluigi Politi, Valdo Ricca

Abstract read
In one paragraph

Article in Brain imaging and behavior, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Livio TarchiPsychiatry Unit, Department of Health Sciences, University of Florence, viale della Maternità, Padiglione 8b, AOU Careggi, Firenze, Florence, FI, 50134, Italy. livio.tarchi@unifi.it.ORCID http://orcid.org/0000-0002-9931-5621
Stefano DamianiDepartment of Brain and Behavioral Sciences, University of Pavia, Pavia, PV, Italy.
Paolo La Torraca VittoriDepartment of Brain and Behavioral Sciences, University of Pavia, Pavia, PV, Italy.
Simone MariniDepartment of Epidemiology, University of Florida, Gainesville, FL, USA.
Nelson NazzicariCouncil for Agricultural Research and Economics (CREA), Research Centre for Fodder Crops and Dairy Productions, Lodi, LO, Italy.
Giovanni CastelliniPsychiatry Unit, Department of Health Sciences, University of Florence, viale della Maternità, Padiglione 8b, AOU Careggi, Firenze, Florence, FI, 50134, Italy.
Tiziana PisanoPediatric Neurology, Neurogenetics and Neurobiology Unit and Laboratories, Neuroscience Department, Meyer Children's Hospital, University of Florence, Florence, Italy.
Pierluigi PolitiDepartment of Brain and Behavioral Sciences, University of Pavia, Pavia, PV, Italy.
Valdo RiccaPsychiatry Unit, Department of Health Sciences, University of Florence, viale della Maternità, Padiglione 8b, AOU Careggi, Firenze, Florence, FI, 50134, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several systematic reviews have highlighted the role of multiple sources in the investigation of psychiatric illness. For what concerns fMRI, the focus of recent literature preferentially lies on three lines of research, namely: functional connectivity, network analysis and spectral analysis. Data was gathered from the UCLA Consortium for Neuropsychiatric Phenomics. The sample was composed by 130 neurotypicals, 50 participants diagnosed with Schizophrenia, 49 with Bipolar disorder and 43 with ADHD. Single fMRI scans were reduced in their dimensionality by a novel method (i-ECO) averaging results per Region of Interest and through an additive color method (RGB): local connectivity values (Regional Homogeneity), network centrality measures (Eigenvector Centrality), spectral dimensions (fractional Amplitude of Low-Frequency Fluctuations). Average images per diagnostic group were plotted and described. The discriminative power of this novel method for visualizing and analyzing fMRI results in an integrative manner was explored through the usage of convolutional neural networks. The new methodology of i-ECO showed between-groups differences that could be easily appreciated by the human eye. The precision-recall Area Under the Curve (PR-AUC) of our models was > 84.5% for each diagnostic group as evaluated on the test-set - 80/20 split. In conclusion, this study provides evidence for an integrative and easy-to-understand approach in the analysis and visualization of fMRI results. A high discriminative power for psychiatric conditions was reached. This proof-of-work study may serve to investigate further developments over more extensive datasets covering a wider range of psychiatric diagnoses.

Indexed as

Magnetic Resonance ImagingSchizophreniaBrainBrain MappingColorHumansEigenvector CentralityfALFFfMRIPsychiatryReHo

Identifiers

PMID34689318
PMCPMC9107439

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.