Evidence map›Paper›PMID 34686315›Full record

ArticleMolecular cell2021

Aberrant RNA methylation triggers recruitment of an alkylation repair complex.

Ning Tsao, Joshua R Brickner, Rebecca Rodell, Adit Ganguly, Matthew Wood, Clement Oyeniran, Tanveer Ahmad, Hua Sun, Albino Bacolla, Lisheng Zhang and 9 more

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Secret Life of NJournal of molecular biology · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Small Cell Lung Cancer-An Update on Chemotherapy Resistance.Current treatment options in oncology · 2024
    Review
  15. The Molecular Basis of Human ALKBH3 Mediated RNA NAngewandte Chemie (International ed. in English) · 2024
    Article
  16. Article
  17. How RNA impacts DNA repair.DNA repair · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Ning TsaoDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Joshua R BricknerDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Rebecca RodellDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Adit GangulyDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Matthew WoodDivision of Oncology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Edward A. Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO 63104, USA.
Clement OyeniranDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Tanveer AhmadInstitute for Advanced Biosciences, Grenoble Alpes University, CNRS UMR5309, INSERM U1209, Grenoble, France.
Hua SunDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Albino BacollaDepartment of Molecular and Cellular Oncology, University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Lisheng ZhangDepartment of Biochemistry and Molecular Biology, Department of Chemistry, and Institute for Biophysical Dynamics, University of Chicago, Chicago IL 60637, USA.
Valentina LukinovićInstitute for Advanced Biosciences, Grenoble Alpes University, CNRS UMR5309, INSERM U1209, Grenoble, France.
Jennifer M SollDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Brittany A TownleyDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Alexandre G CasanovaInstitute for Advanced Biosciences, Grenoble Alpes University, CNRS UMR5309, INSERM U1209, Grenoble, France.
John A TainerDepartment of Molecular and Cellular Oncology, University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Chuan HeDepartment of Biochemistry and Molecular Biology, Department of Chemistry, and Institute for Biophysical Dynamics, University of Chicago, Chicago IL 60637, USA; Howard Hughes Medical Institute, University of Chicago, Chicago IL 60637, USA.
Alessandro VindigniDivision of Oncology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Nicolas ReynoirdInstitute for Advanced Biosciences, Grenoble Alpes University, CNRS UMR5309, INSERM U1209, Grenoble, France.
Nima MosammaparastDepartment of Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA. Electronic address: nima@wustl.edu.
Washington University in St. Louis · USCentre National de la Recherche Scientifique · FRThe University of Texas MD Anderson Cancer Center · USHoward Hughes Medical Institute · USUniversity of Chicago · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Mechanisms of replication fork protection and recoveryR01CA248526 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni, Lee Zou · 2020 to 2026
$3.6M
MECHANISM AND REGULATION OF THE DNA ALKYLATION DAMAGE RESPONSER01CA193318 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2015 to 2024
$3.6M
Replication fork repriming versus reversalR01CA237263 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni · 2019 to 2026
$3.0M
A SIGNALING PATHWAY SPECIFIC FOR ALKYLATION DAMAGER01CA227001 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2018 to 2022
$1.8M
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA193318NCI NIH HHS R01 CA227001NCI NIH HHS R01 CA237263NCI NIH HHS R01 CA248526
6 · The paper itself

Abstract

Central to genotoxic responses is their ability to sense highly specific signals to activate the appropriate repair response. We previously reported that the activation of the ASCC-ALKBH3 repair pathway is exquisitely specific to alkylation damage in human cells. Yet the mechanistic basis for the selectivity of this pathway was not immediately obvious. Here, we demonstrate that RNA but not DNA alkylation is the initiating signal for this process. Aberrantly methylated RNA is sufficient to recruit ASCC, while an RNA dealkylase suppresses ASCC recruitment during chemical alkylation. In turn, recruitment of ASCC during alkylation damage, which is mediated by the E3 ubiquitin ligase RNF113A, suppresses transcription and R-loop formation. We further show that alkylated pre-mRNA is sufficient to activate RNF113A E3 ligase in vitro in a manner dependent on its RNA binding Zn-finger domain. Together, our work identifies an unexpected role for RNA damage in eliciting a specific response to genotoxins.

Indexed as

RNA Processing, Post-TranscriptionalAlkB Homolog 3, Alpha-Ketoglutarate-Dependent DioxygenaseCell NucleusDNA-Binding ProteinsDNA HelicasesDNA MethylationHEK293 CellsHeLa CellsHumansMethylationNeoplasmsNuclear ProteinsR-Loop StructuresRNA, NeoplasmSpliceosomesTranscription, GeneticALKBH3 protein, humanAlkB Homolog 3, Alpha-Ketoglutarate-Dependent DioxygenaseASCC2 protein, humanASCC3 protein, humanDNA-Binding ProteinsDNA HelicasesNuclear ProteinsRNA, NeoplasmRNF113A protein, humanalkylationASCCE3 ligasegenome stabilityRNA methylationRNF113Atranscription

Identifiers

PMID34686315
PMCPMC8931856
OpenAlexW3205615234

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.