Evidence map›Paper›PMID 34685872›Full record

ArticlePlants (Basel, Switzerland)2021

Development of SNP Set for the Marker-Assisted Selection of Guar (

Elizaveta Grigoreva, Yury Barbitoff, Anton Changalidi, Dmitry Karzhaev, Vladimir Volkov, Veronika Shadrina, Elizaveta Safronycheva, Cécile Ben, Laurent Gentzbittel, Elena Potokina

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Genome-Wide Association Study for Nodule Traits in Guar.Current issues in molecular biology · 2025
    Article
  2. Article
  3. Frontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Elizaveta GrigorevaInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.ORCID 0000-0002-7285-2291
Yury BarbitoffDepartment of Cytology and Histology, Saint Petersburg State University, St. Petersburg 199034, Russia.
Anton ChangalidiBioinformatics Institute, St. Petersburg 197342, Russia.ORCID 0000-0003-4752-2239
Dmitry KarzhaevInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.
Vladimir VolkovInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.ORCID 0000-0002-2933-4456
Veronika ShadrinaInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.
Elizaveta SafronychevaInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.
Cécile BenSkolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0003-3963-9023
Laurent GentzbittelSkolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0001-7851-0332
Elena PotokinaInstitute of Forest and Natural Resources Management, Saint Petersburg State Forest Technical University, St. Petersburg 194021, Russia.
Sirius University of Science and Technology · RUSaint Petersburg State Forest Technical University · RUSkolkovo Institute of Science and Technology · RUSt Petersburg University · RUITMO University · RU

Funding

Russian Foundation for Basic Research №19-316-51007, №17-29-08027-ofi-m
6 · The paper itself

Abstract

Guar gum, a polysaccharide derived from guar seeds, is widely used in a variety of industrial applications, including oil and gas production. Although guar is mostly propagated in India, interest in guar as a new industrial legume crop is increasing worldwide, demanding the development of effective tools for marker-assisted selection. In this paper, we report a wide-ranging set of 4907 common SNPs and 327 InDels generated from RADseq genotyping data of 166 guar plants of different geographical origin. A custom guar reference genome was assembled and used for variant calling. A consensus set of variants was built using three bioinformatic pipelines for short variant discovery. The developed molecular markers were used for genome-wide association study, resulting in the discovery of six markers linked to the variation of an important agronomic trait-percentage of pods matured to the harvest date under long light day conditions. One of the associated variants was found inside the putative transcript sequence homologous to an ABC transporter in

Indexed as

guarGWASmyo-inositol phosphate metabolismpopulation structureRADseqSNPs

Identifiers

PMID34685872
PMCPMC8539970
OpenAlexW3203373534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.