Evidence map›Paper›PMID 34681586›Full record

ArticleInternational journal of molecular sciences2021

Insight into the Binding and Hydrolytic Preferences of hNudt16 Based on Nucleotide Diphosphate Substrates.

Magdalena Chrabąszczewska, Maria Winiewska-Szajewska, Natalia Ostrowska, Elżbieta Bojarska, Janusz Stępiński, Łukasz Mancewicz, Maciej Łukaszewicz, Joanna Trylska, Michał Taube, Maciej Kozak and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Application of Mammalian Nudix Enzymes to Capped RNA Analysis.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. The Role of Hydrolases in Biology and Xenobiotics Metabolism.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Magdalena ChrabąszczewskaDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.ORCID 0000-0002-1847-5376
Maria Winiewska-SzajewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland.ORCID 0000-0003-0986-6882
Natalia OstrowskaCentre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland.
Elżbieta BojarskaCentre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland.
Janusz StępińskiCentre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland.
Łukasz MancewiczDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.
Maciej ŁukaszewiczDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.
Joanna TrylskaCentre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland.ORCID 0000-0002-1464-5323
Michał TaubeDepartment of Macromolecular Physics, Faculty of Physics, Adam Mickiewicz University, Uniwersytetu Poznanskiego 2, 61-614 Poznan, Poland.ORCID 0000-0002-8876-929X
Maciej KozakDepartment of Macromolecular Physics, Faculty of Physics, Adam Mickiewicz University, Uniwersytetu Poznanskiego 2, 61-614 Poznan, Poland.ORCID 0000-0003-3312-6518
Edward DarżynkiewiczDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.
Renata GrzelaDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.ORCID 0000-0002-1971-6012
University of Warsaw · PLAdam Mickiewicz University in Poznań · PLInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLJagiellonian University · PL

Funding

Narodowe Centrum Nauki UMO/2017/27/B/NZ1/01859Narodowe Centrum Nauki UMO-2019/33/B/NZ1/01322
6 · The paper itself

Abstract

Nudt16 is a member of the NUDIX family of hydrolases that show specificity towards substrates consisting of a nucleoside diphosphate linked to another moiety X. Several substrates for hNudt16 and various possible biological functions have been reported. However, some of these reports contradict each other and studies comparing the substrate specificity of the hNudt16 protein are limited. Therefore, we quantitatively compared the affinity of hNudt16 towards a set of previously published substrates, as well as identified novel potential substrates. Here, we show that hNudt16 has the highest affinity towards IDP and GppG, with K

Indexed as

Binding SitesCircular DichroismDinucleoside PhosphatesHumansHydrolysisKineticsMolecular Docking SimulationProtein StabilityPyrophosphatasesSubstrate SpecificityThermodynamicsDinucleoside PhosphatesNudt16 protein, humanPyrophosphatasesdinucleoside diphosphatesDSFGppGhNudt16IDPMSTnudix familySAXS

Identifiers

PMID34681586
PMCPMC8535469
OpenAlexW3206756392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.