Evidence map›Paper›PMID 34679093›Full record

ArticlePloS one2021

Bioinformatics analysis identifies DYNC1I1 as prognosis marker in male patients with liver hepatocellular carcinoma.

Jian Zhou, Yue Zhu, Songlin Ma, Yi Li, Kun Liu, Sihuan Xu, Xin Li, Li Li, Junfang Hu, Yan Liu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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  5. Ubiquitin Proteasome Gene Signatures in Ependymoma Molecular Subtypes.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jian ZhouDepartment of Infectious Diseases, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Yue ZhuBiological Cell Therapy Research Center, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Songlin MaDepartment of Gastroenterology, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Yi LiDepartment of Infectious Diseases, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Kun LiuOtorhinolaryngology, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Sihuan XuBiological Cell Therapy Research Center, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Xin LiBiological Cell Therapy Research Center, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Li LiThe Ministry of Science and Education, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Junfang HuDepartment of Pharmacy, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.
Yan LiuBiological Cell Therapy Research Center, Puren Hospital Affiliated to Wuhan University of Science and Technology, Wuhan, Hubei, China.ORCID 0000-0002-9123-4974
Wuhan University of Science and Technology · CNCentral Hospital of Wuhan · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLiver hepatocellular carcinoma (LIHC) is one of the most common malignant tumors. However, the etiology and exact molecular mechanism of LIHC are still not fully understood, which makes it urgent for us to further study the molecular events behind.

methodsIn this study, differences in mRNA expression between LIHC samples and normal adjacent samples were found through analyzing the TCGA database, and key targets were sought. We analyzed 371 LIHC samples and 50 normal adjacent samples according to P <0.01 and logFC>2.5, a total of 1092 genes were identified differentially expressed, including 995 up-regulated genes and 97 down-regulated genes. We predicted the interactions of these differentially expressed mRNAs, and used Cyto-Hubba to locate the hub gene-dynein cytoplasmic 1 intermediate chain 1 (DYNC1I1).

resultsSurvival analysis showed that DYNC1I1 was a prognostic factor for LIHC male patients. Functional enrichment indicated that DYNC1I1 and differentially expressed interacting proteins were involved in the cell cycle.

conclusionIn conclusion, this study discovers that DYNC1I1 can be used as a prognostic marker for LIHC male patients.

Indexed as

Biomarkers, TumorCarcinoma, HepatocellularCase-Control StudiesComputational BiologyCytoplasmic DyneinsDatabases, GeneticFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansLiver NeoplasmsMalePrognosisSex CharacteristicsSurvival AnalysisBiomarkers, TumorCytoplasmic DyneinsDYNC1I1 protein, human

Identifiers

PMID34679093
PMCPMC8535175
OpenAlexW3205231875

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.