Evidence map›Paper›PMID 34677404›Full record

ArticleMetabolites2021

A Metabolomics Investigation of the Metabolic Changes of Raji B Lymphoma Cells Undergoing Apoptosis Induced by Zinc Ions.

Naeun Yoon, Hyunbeom Lee, Geonhee Lee, Eun Hye Kim, Seong Hwan Kim, Jeong-O Lee, Yunseon Song, Jinyoung Park, So-Dam Kim, Yeojin Kim and 1 more

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Naeun YoonMolecular Recognition Research Center, Korea Institute of Science and Technology, Seoul 02792, Korea.
Hyunbeom LeeMolecular Recognition Research Center, Korea Institute of Science and Technology, Seoul 02792, Korea.ORCID 0000-0001-6954-7520
Geonhee LeeAdvanced Materials Division, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Eun Hye KimDrug Discovery Platform Research Center, Department of Drug Discovery, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Seong Hwan KimDrug Discovery Platform Research Center, Department of Drug Discovery, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Jeong-O LeeAdvanced Materials Division, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Yunseon SongCollege of Pharmacy, Sookmyung Women's University, Seoul 04310, Korea.
Jinyoung ParkMolecular Recognition Research Center, Korea Institute of Science and Technology, Seoul 02792, Korea.
So-Dam KimCollege of Pharmacy, Sookmyung Women's University, Seoul 04310, Korea.
Yeojin KimCollege of Pharmacy, Sookmyung Women's University, Seoul 04310, Korea.
Byung Hwa JungMolecular Recognition Research Center, Korea Institute of Science and Technology, Seoul 02792, Korea.ORCID 0000-0002-7504-7132
Sookmyung Women's University · KRKorea Research Institute of Chemical Technology · KRKorea Institute of Science and Technology · KRBio-Medical Science (South Korea) · KR

Funding

Bio-Synergy Research Project NRF2013M3A9C4078145Creative Fusion Research Program through the Creative Allied Project CAP-12-1-KISTFuture Planning through the National Research Foundation by KIST 2E30480
6 · The paper itself

Abstract

Zinc plays a pivotal role in the function of cells and can induce apoptosis in various cancer cells, including Raji B lymphoma. However, the metabolic mechanism of Zn-induced apoptosis in Raji cells has not been explored. In this study, we performed global metabolic profiling using UPLC-Orbitrap-MS to assess the apoptosis of Raji cells induced by Zn ions released from ZnO nanorods. Multivariate analysis and database searches identified altered metabolites. Furthermore, the differences in the phosphorylation of 1380 proteins were also evaluated by Full Moon kinase array to discover the protein associated Zn-induced apoptosis. From the results, a prominent increase in glycerophosphocholine and fatty acids was observed after Zn ion treatment, but only arachidonic acid was shown to induce apoptosis. The kinase array revealed that the phosphorylation of p53, GTPase activation protein, CaMK2a, PPAR-γ, and PLA-2 was changed. From the pathway analysis, metabolic changes showed earlier onset than protein signaling, which were related to choline metabolism. LC-MS analysis was used to quantify the intracellular choline concentration, which decreased after Zn treatment, which may be related to the choline consumption required to produce choline-containing metabolites. Overall, we found that choline metabolism plays an important role in Zn-induced Raji cell apoptosis.

Indexed as

apoptosiscancercell metabolomicsmetabolomicszinc ion

Identifiers

PMID34677404
PMCPMC8540409
OpenAlexW3204627274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.