Evidence map›Paper›PMID 34675414›Full record

ArticleNature chemical biology2021

Trivalent PROTACs enhance protein degradation via combined avidity and cooperativity.

Satomi Imaide, Kristin M Riching, Nikolai Makukhin, Vesna Vetma, Claire Whitworth, Scott J Hughes, Nicole Trainor, Sarah D Mahan, Nancy Murphy, Angus D Cowan and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 228 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 3 countries.

Satomi Imaide *Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.ORCID http://orcid.org/0000-0003-4372-4693
Kristin M Riching *Promega Corporation, Madison, WI, USA.ORCID http://orcid.org/0000-0003-4646-1067
Nikolai Makukhin *Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Vesna VetmaDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Claire WhitworthDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.ORCID http://orcid.org/0000-0003-3174-7652
Scott J HughesDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Nicole TrainorDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Sarah D MahanPromega Corporation, Madison, WI, USA.
Nancy MurphyPromega Corporation, Madison, WI, USA.
Angus D CowanDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.ORCID http://orcid.org/0000-0002-9702-7319
Kwok-Ho ChanDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.ORCID http://orcid.org/0000-0002-6693-2682
Conner CraigonDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Andrea TestaDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.
Chiara ManiaciDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK.ORCID http://orcid.org/0000-0001-7887-7388
Marjeta UrhPromega Corporation, Madison, WI, USA.ORCID http://orcid.org/0000-0003-2148-0341
Danette L DanielsPromega Corporation, Madison, WI, USA. danette.daniels@promega.com.ORCID http://orcid.org/0000-0002-7659-3020
Alessio CiulliDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, James Black Centre, Dundee, UK. a.ciulli@dundee.ac.uk.ORCID http://orcid.org/0000-0002-8654-1670
University of Dundee · GBPromega (United States) · US

Funding

European Research Council 311460Medical Research Council MR/N0123735/1Wellcome TrustWellcome Trust (Wellcome) 094090/Z/10/ZWellcome Trust (Wellcome) 100476/Z/12/Z
6 · The paper itself

Abstract

Bivalent proteolysis-targeting chimeras (PROTACs) drive protein degradation by simultaneously binding a target protein and an E3 ligase and forming a productive ternary complex. We hypothesized that increasing binding valency within a PROTAC could enhance degradation. Here, we designed trivalent PROTACs consisting of a bivalent bromo and extra terminal (BET) inhibitor and an E3 ligand tethered via a branched linker. We identified von Hippel-Lindau (VHL)-based SIM1 as a low picomolar BET degrader with preference for bromodomain containing 2 (BRD2). Compared to bivalent PROTACs, SIM1 showed more sustained and higher degradation efficacy, which led to more potent anticancer activity. Mechanistically, SIM1 simultaneously engages with high avidity both BET bromodomains in a cis intramolecular fashion and forms a 1:1:1 ternary complex with VHL, exhibiting positive cooperativity and high cellular stability with prolonged residence time. Collectively, our data along with favorable in vivo pharmacokinetics demonstrate that augmenting the binding valency of proximity-induced modalities can be an enabling strategy for advancing functional outcomes.

Indexed as

HumansProteolysisUbiquitin-Protein LigasesUbiquitin-Protein Ligases

Identifiers

PMID34675414
PMCPMC7611906
OpenAlexW3205001044

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.