Evidence map›Paper›PMID 34674636›Full record

ReviewBMC bioinformatics2021

Using neural networks to support high-quality evidence mapping.

Thomas B Røst, Laura Slaughter, Øystein Nytrø, Ashley E Muller, Gunn E Vist

Abstract readReview
In one paragraph

Review in BMC bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Thomas B RøstDepartment of Computer Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway. brox@ntnu.no.ORCID http://orcid.org/0000-0001-8395-7868
Laura SlaughterDepartment of Computer Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.
Øystein NytrøDepartment of Computer Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.
Ashley E MullerReviews and Health Technology Assessments, Norwegian Institute of Public Health (NIPH), Oslo, Norway.
Gunn E VistReviews and Health Technology Assessments, Norwegian Institute of Public Health (NIPH), Oslo, Norway.

Funding

Norges Forskningsråd 259055
6 · The paper itself

Abstract

backgroundThe Living Evidence Map Project at the Norwegian Institute of Public Health (NIPH) gives an updated overview of research results and publications. As part of NIPH's mandate to inform evidence-based infection prevention, control and treatment, a large group of experts are continously monitoring, assessing, coding and summarising new COVID-19 publications. Screening tools, coding practice and workflow are incrementally improved, but remain largely manual.

resultsThis paper describes how deep learning methods have been employed to learn classification and coding from the steadily growing NIPH COVID-19 dashboard data, so as to aid manual classification, screening and preprocessing of the rapidly growing influx of new papers on the subject. Our main objective is to make manual screening scalable through semi-automation, while ensuring high-quality Evidence Map content.

conclusionsWe report early results on classifying publication topic and type from titles and abstracts, showing that even simple neural network architectures and text representations can yield acceptable performance.

Indexed as

COVID-19HumansMass ScreeningNeural Networks, ComputerPublic HealthSARS-CoV-2Automated codingDeep learningEvidence based medicineEvidence mapsKnowledge disseminationMachine learning

Identifiers

PMID34674636
PMCPMC8529368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.