Evidence map›Paper›PMID 34674011›Full record

ArticleArchives of virology2022

Molecular characteristics of a novel hypovirus from Trichoderma harzianum.

Jeesun Chun, Kum-Kang So, Yo-Han Ko, Dae-Hyuk Kim

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. A collection ofVirus evolution · 2023
    Article
  6. Article
  7. Frontiers in fungal biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jeesun Chun *Department of Molecular Biology, Institute for Molecular Biology and Genetics, Jeonbuk National University, 567 Baekje-daero, Jeonju, 54896, Korea.
Kum-Kang So *Department of Molecular Biology, Institute for Molecular Biology and Genetics, Jeonbuk National University, 567 Baekje-daero, Jeonju, 54896, Korea.
Yo-Han KoDepartment of Molecular Biology, Institute for Molecular Biology and Genetics, Jeonbuk National University, 567 Baekje-daero, Jeonju, 54896, Korea.
Dae-Hyuk KimDepartment of Molecular Biology, Institute for Molecular Biology and Genetics, Jeonbuk National University, 567 Baekje-daero, Jeonju, 54896, Korea. dhkim@jbnu.ac.kr.ORCID http://orcid.org/0000-0002-9948-5313

Funding

National Research Foundation of Korea [NRF-2018R1A2A1A05078682]
6 · The paper itself

Abstract

We report a novel mycovirus with a positive-sense single-stranded (+)ss RNA genome, belonging to the family Hypoviridae, infecting Trichoderma harzianum strain M6. The complete genome sequence is 13,813 nucleotides long, excluding the poly(A) tail at the 3' end. Sequence analysis revealed that the genome has a single large open reading frame (ORF) encoding a 4,118-amino-acid polyprotein harboring five conserved motifs of a protease, two conserved domains of a protein of unknown function, an RNA-dependent RNA polymerase, and a helicase. Sequence comparisons revealed that the deduced amino acid sequence of the polyprotein is similar to those of other hypoviruses and is most similar to that of Bipolaris oryzae hypovirus 1 (35.1% identity). Phylogenetic analysis using full-length RdRp and helicase sequences showed that this virus clustered closely with known members of the proposed genus "Alphahypovirus" of the family Hypoviridae. We accordingly designated this novel mycovirus "Trichoderma harzianum hypovirus 2" (ThHV2).

Indexed as

AscomycotaRNA VirusesGenome, ViralHypocrealesOpen Reading FramesPhylogenyRNA, ViralViral ProteinsRNA, ViralViral Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.