Evidence map›Paper›PMID 34673825›Full record

ArticlePLoS pathogens2021

Inhibition of the H3K27 demethylase UTX enhances the epigenetic silencing of HIV proviruses and induces HIV-1 DNA hypermethylation but fails to permanently block HIV reactivation.

Kien Nguyen, Curtis Dobrowolski, Meenakshi Shukla, Won-Kyung Cho, Benjamin Luttge, Jonathan Karn

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 32 citations in OpenAlex.

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  18. Structural rearrangements in the nucleus localize latent HIV proviruses to a perinucleolar compartment supportive of reactivation.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kien NguyenDepartment of Molecular Biology and Microbiology, Case Western Reserve University Medical School, Cleveland, Ohio, United States of America.ORCID 0000-0002-7088-3457
Curtis DobrowolskiWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory School of Medicine, Atlanta, Georgia, United States of America.ORCID 0000-0001-6576-8318
Meenakshi ShuklaDepartment of Molecular Biology and Microbiology, Case Western Reserve University Medical School, Cleveland, Ohio, United States of America.
Won-Kyung ChoKorean Medicine (KM)-Application Center, Korea Institute of Oriental Medicine (KIOM), Dong-gu, Daegu, Republic of Korea.
Benjamin LuttgeDepartment of Molecular Biology and Microbiology, Case Western Reserve University Medical School, Cleveland, Ohio, United States of America.ORCID 0000-0002-1296-8014
Jonathan KarnDepartment of Molecular Biology and Microbiology, Case Western Reserve University Medical School, Cleveland, Ohio, United States of America.ORCID 0000-0002-2900-094X
Case Western Reserve University · USGeorgia Institute of Technology · USKorea Institute of Oriental Medicine · KR

Funding

Gene editing strategies to target HIV for elimination in periphery and brainR01MH110360 · NIMH · DREXEL UNIVERSITY · PI Ilker Kudret Sariyer, Brian Wigdahl · 2016 to 2026
$7.3M
Reversal of HIV latency by METH and InflammationR01DA043159 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2016 to 2020
$3.7M
Control of P-TEFb biogenesis and HIV transcription in primary T-cellsR01AI148083 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN, MBONYE, URI · 2019 to 2023
$2.0M
NIAID NIH HHS R01 AI148083NIDA NIH HHS R01 DA043159NIMH NIH HHS R01 MH110360
6 · The paper itself

Abstract

One strategy for a functional cure of HIV-1 is "block and lock", which seeks to permanently suppress the rebound of quiescent HIV-1 by epigenetic silencing. For the bivalent promoter in the HIV LTR, both histone 3 lysine 27 tri-methylation (H3K27me3) and DNA methylation are associated with viral suppression, while H3K4 tri-methylation (H3K4me3) is correlated with viral expression. However, H3K27me3 is readily reversed upon activation of T-cells through the T-cell receptor. In an attempt to suppress latent HIV-1 in a stable fashion, we knocked down the expression or inhibited the activity of UTX/KDM6A, the major H3K27 demethylase, and investigated its impact on latent HIV-1 reactivation in T cells. Inhibition of UTX dramatically enhanced H3K27me3 levels at the HIV LTR and was associated with increased DNA methylation. In latently infected cells from patients, GSK-J4, which is a potent dual inhibitor of the H3K27me3/me2-demethylases JMJD3/KDM6B and UTX/KDM6A, effectively suppressed the reactivation of latent HIV-1 and also induced DNA methylation at specific sites in the 5'LTR of latent HIV-1 by the enhanced recruitment of DNMT3A to HIV-1. Nonetheless, suppression of HIV-1 through epigenetic silencing required the continued treatment with GSK-J4 and was rapidly reversed after removal of the drug. DNA methylation was also rapidly lost after removal of drug, suggesting active and rapid DNA-demethylation of the HIV LTR. Thus, induction of epigenetic silencing by histone and DNA methylation appears to be insufficient to permanently silence HIV-1 proviral transcription.

Indexed as

BenzazepinesDNA MethylationHistone DemethylasesHIV-1HIV InfectionsHumansProvirusesPyrimidinesVirus ActivationVirus LatencyBenzazepinesGSK-J4Histone DemethylasesKDM6A protein, humanPyrimidines

Identifiers

PMID34673825
PMCPMC8562785
OpenAlexW3205199731

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.