Evidence map›Paper›PMID 34672629›Full record

ArticleJournal of chemical information and modeling2021

Cyclosporin A: Conformational Complexity and Chameleonicity.

Satoshi Ono, Matthew R Naylor, Chad E Townsend, Chieko Okumura, Okimasa Okada, Hsiau-Wei Lee, R Scott Lokey

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  7. Review
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  11. Article
  12. Article
  13. Review
  14. Article
  15. Predicting pRSC advances · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Satoshi OnoModality Laboratories, Innovative Research Division, Mitsubishi Tanabe Pharma Corporation, 1000 Kamoshida-cho, Aoba-ku, Yokohama, Kanagawa 227-0033, Japan.ORCID 0000-0001-5631-5923
Matthew R NaylorDepartment of Chemistry and Biochemistry, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, United States.ORCID 0000-0001-7043-5972
Chad E TownsendDepartment of Chemistry and Biochemistry, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, United States.ORCID 0000-0002-2251-7989
Chieko OkumuraModality Laboratories, Innovative Research Division, Mitsubishi Tanabe Pharma Corporation, 1000 Kamoshida-cho, Aoba-ku, Yokohama, Kanagawa 227-0033, Japan.
Okimasa OkadaModality Laboratories, Innovative Research Division, Mitsubishi Tanabe Pharma Corporation, 1000 Kamoshida-cho, Aoba-ku, Yokohama, Kanagawa 227-0033, Japan.
Hsiau-Wei LeeDepartment of Chemistry and Biochemistry, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, United States.
R Scott LokeyDepartment of Chemistry and Biochemistry, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, United States.ORCID 0000-0001-9891-1248

Funding

Cyclic peptide permeabilityR01GM131135 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOKEY, ROBERT SCOTT · 2019 to 2022
$1.3M
Synthesis and discovery of biologically active cell-permeable cyclic peptidesR01GM084530 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOKEY, ROBERT SCOTT · 2009 to 2012
$1.3M
NIGMS NIH HHS R01 GM084530NIGMS NIH HHS R01 GM131135
6 · The paper itself

Abstract

The chameleonic behavior of cyclosporin A (CsA) was investigated through conformational ensembles employing multicanonical molecular dynamics simulations that could sample the cis and trans isomers of N-methylated amino acids; these assessments were conducted in explicit water, dimethyl sulfoxide, acetonitrile, methanol, chloroform, cyclohexane (CHX), and

Indexed as

CyclosporineMolecular Dynamics SimulationMolecular ConformationProtein ConformationSolventsWaterCyclosporineSolventsWater

Identifiers

PMID34672629
PMCPMC9531541

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.