Evidence map›Paper›PMID 34672606›Full record

ReviewJournal of proteome research2021

Advances and Utility of the Human Plasma Proteome.

Eric W Deutsch, Gilbert S Omenn, Zhi Sun, Michal Maes, Maria Pernemalm, Krishnan K Palaniappan, Natasha Letunica, Yves Vandenbrouck, Virginie Brun, Sheng-Ce Tao and 5 more

Abstract readReview
In one paragraph

Review in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 6 syntheses or guidelines pooled it.

  1. Pooled it
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  3. Screening for Circulating Inflammatory Proteins Does Not Reveal Plasma Biomarkers of Constant Tinnitus.Journal of the Association for Research in Otolaryngology : JARO · 2023
    Pooled it
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  6. Predicted Proteome Association Studies of Breast, Prostate, Ovarian, and Endometrial Cancers Implicate Plasma Protein Regulation in Cancer Susceptibility.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Pooled it
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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Eric W DeutschInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0001-8732-0928
Gilbert S OmennInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0002-8976-6074
Zhi SunInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0003-3324-6851
Michal MaesInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0002-7406-3982
Maria PernemalmDepartment of Oncology and Pathology/Science for Life Laboratory, Karolinska Institutet, 171 65 Stockholm, Sweden.ORCID 0000-0003-4624-031X
Krishnan K PalaniappanFreenome, 259 East Grand Avenue, South San Francisco, California 94080, United States.ORCID 0000-0003-0203-9016
Natasha LetunicaMurdoch Children's Research Institute, 50 Flemington Road, Parkville 3052, Victoria, Australia.ORCID 0000-0003-3604-1536
Yves VandenbrouckUniversité Grenoble Alpes, CEA, Inserm U1292, Grenoble 38000, France.ORCID 0000-0002-1292-373X
Virginie BrunUniversité Grenoble Alpes, CEA, Inserm U1292, Grenoble 38000, France.ORCID 0000-0002-9098-8707
Sheng-Ce TaoKey Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, B207 SCSB Building, 800 Dongchuan Road, Shanghai 200240, China.ORCID 0000-0002-9210-1823
Xiaobo YuState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences-Beijing (PHOENIX Center), Beijing Institute of Lifeomics, Beijing 102206, China.
Philipp E GeyerOmicEra Diagnostics GmbH, Behringstr. 6, 82152 Planegg, Germany.ORCID 0000-0001-7980-4826
Vera IgnjatovicMurdoch Children's Research Institute, 50 Flemington Road, Parkville 3052, Victoria, Australia.ORCID 0000-0002-5548-5813
Robert L MoritzInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0002-3216-9447
Jochen M SchwenkAffinity Proteomics, Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Tomtebodavägen 23, SE-171 65 Solna, Sweden.ORCID 0000-0001-8141-8449

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI Ryan Tewhey · 2004 to 2026
$102.6M
Strategic Vision & Impact on Environmental HealthP30ES017885 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Dana Dolinoy · 2011 to 2026
$21.3M
Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
University of Michigan Proteogenomics Data Analysis CenterU24CA210967 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHINNAIYAN, ARUL M, DHANASEKARAN, SARAVANA M · 2016 to 2020
$4.1M
Integrative Omics to enhance therapeutics development for healthy agingUH3AG064706 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI MILLER, RICHARD A, SCHORK, NICHOLAS JOSEPH · 2021 to 2024
$3.3M
Advancing data and metadata standards for proteomics mass spectraR24GM127667 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC · 2017 to 2019
$1.2M
Acquisition of Fusion Lumos Orbitrap mass spectrometerS10OD026936 · OD · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2019 to 2019
$600k
NCI NIH HHS U24 CA210967NIA NIH HHS U19 AG023122NIA NIH HHS UH3 AG064706NIEHS NIH HHS P30 ES017885NIGMS NIH HHS R01 GM087221NIGMS NIH HHS R24 GM127667NIH HHS S10 OD026936
6 · The paper itself

Abstract

The study of proteins circulating in blood offers tremendous opportunities to diagnose, stratify, or possibly prevent diseases. With recent technological advances and the urgent need to understand the effects of COVID-19, the proteomic analysis of blood-derived serum and plasma has become even more important for studying human biology and pathophysiology. Here we provide views and perspectives about technological developments and possible clinical applications that use mass-spectrometry(MS)- or affinity-based methods. We discuss examples where plasma proteomics contributed valuable insights into SARS-CoV-2 infections, aging, and hemostasis and the opportunities offered by combining proteomics with genetic data. As a contribution to the Human Proteome Organization (HUPO) Human Plasma Proteome Project (HPPP), we present the Human Plasma PeptideAtlas build 2021-07 that comprises 4395 canonical and 1482 additional nonredundant human proteins detected in 240 MS-based experiments. In addition, we report the new Human Extracellular Vesicle PeptideAtlas 2021-06, which comprises five studies and 2757 canonical proteins detected in extracellular vesicles circulating in blood, of which 74% (2047) are in common with the plasma PeptideAtlas. Our overview summarizes the recent advances, impactful applications, and ongoing challenges for translating plasma proteomics into utility for precision medicine.

Indexed as

ProteomeAgingCOVID-19Databases, ProteinHemostasisHumansMass SpectrometryProteomicsProteomebloodDNA aptamers (Somascan)Human Plasma Proteome ProjectHuman Proteome Projectmass spectrometryPeptideAtlasplasmaproteomicsproximity extension assays (PEA by Olink)

Identifiers

PMID34672606
PMCPMC9469506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.