Evidence map›Paper›PMID 34672410›Full record

ArticleChembiochem : a European journal of chemical biology2022

Engineering of a Plant Isoprenyl Diphosphate Synthase for Development of Irregular Coupling Activity.

Iryna Gerasymenko, Yuriy V Sheludko, Ismael Navarro Fuertes, Volker Schmidts, Lara Steinel, Elisabeth Haumann, Heribert Warzecha

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Biosynthesis of irregular monoterpene lavandulol inSynthetic and systems biotechnology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Iryna GerasymenkoTechnische Universität Darmstadt, Plant Biotechnology and Metabolic Engineering, Schnittspahnstraße 4, 64287, Darmstadt, Germany.ORCID 0000-0002-1027-0368
Yuriy V SheludkoTechnische Universität Darmstadt, Plant Biotechnology and Metabolic Engineering, Schnittspahnstraße 4, 64287, Darmstadt, Germany.ORCID 0000-0002-0297-2191
Ismael Navarro FuertesEcología y Protección Agrícola SL, Pol. Ind. Ciutat de Carlet, 46240, Carlet, Valencia, Spain.ORCID 0000-0002-4954-4709
Volker SchmidtsClemens-Schöpf-Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 4, 64287, Darmstadt, Germany.ORCID 0000-0002-7195-312X
Lara SteinelTechnische Universität Darmstadt, Plant Biotechnology and Metabolic Engineering, Schnittspahnstraße 4, 64287, Darmstadt, Germany.
Elisabeth HaumannTechnische Universität Darmstadt, Plant Biotechnology and Metabolic Engineering, Schnittspahnstraße 4, 64287, Darmstadt, Germany.
Heribert WarzechaTechnische Universität Darmstadt, Plant Biotechnology and Metabolic Engineering, Schnittspahnstraße 4, 64287, Darmstadt, Germany.ORCID 0000-0001-8378-9243
Technische Universität Darmstadt · DE

Funding

Centre for the Development of Industrial TechnologyERACoBioTechEuropean Research Area Cofund ActionGerman Federal Ministry of Education and Research 031B0605Spanish Ministry of Science and InnovationSUSPHIRE
6 · The paper itself

Abstract

We performed mutagenesis on a regular isoprenyl diphosphate synthase (IDS), neryl diphosphate synthase from Solanum lycopersicum (SlNPPS), that has a structurally related analogue performing non-head-to-tail coupling of two dimethylallyl diphosphate (DMAPP) units, lavandulyl diphosphate synthase from Lavandula x intermedia (LiLPPS). Wild-type SlNPPS catalyses regular coupling of isopentenyl diphosphate (IPP) and DMAPP in cis-orientation resulting in the formation of neryl diphosphate. However, if the enzyme is fed with DMAPP only, it is able to catalyse the coupling of two DMAPP units and synthesizes two irregular monoterpene diphosphates; their structures were elucidated by the NMR analysis of their dephosphorylation products. One of the alcohols is lavandulol. The second compound is the trans-isomer of planococcol, the first example of an irregular cyclobutane monoterpene with this stereochemical configuration. The irregular activity of SlNPPS constitutes 0.4 % of its regular activity and is revealed only if the enzyme is supplied with DMAPP in the absence of IPP. The exchange of asparagine 88 for histidine considerably enhanced the non-head-to-tail coupling. While still only observed in the absence of IPP, irregular activity of the mutant reaches 13.1 % of its regular activity. The obtained results prove that regular IDS are promising starting points for protein engineering aiming at the development of irregular activities and leading to novel monoterpene structures.

Indexed as

Protein EngineeringAlkyl and Aryl TransferasesMonoterpenesSolanum lycopersicumAlkyl and Aryl TransferasesMonoterpenesirregular terpenesisoprenyl diphosphate synthaseplanococcolprotein engineeringterpenoids

Identifiers

PMID34672410
PMCPMC9297866
OpenAlexW3207466309

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.