Evidence map›Paper›PMID 34671039›Full record

ArticleNPJ systems biology and applications2021

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.

Kanix Wang, Robert Stevens, Halima Alachram, Yu Li, Larisa Soldatova, Ross King, Sophia Ananiadou, Annika M Schoene, Maolin Li, Fenia Christopoulou and 15 more

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Kanix WangThe Committee on Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, 60637, US.ORCID 0000-0003-1355-577X
Robert StevensDepatment of Computer Science, University of Manchester, M13 9PL, Manchester, UK.
Halima AlachramInstitute of Medical Bioinformatics, University of Göttingen, Goldschmidtstrasse 1, 37077, Göttingen, Germany.
Yu LiComputational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal, Thuwal, 23955, Saudi Arabia.ORCID 0000-0002-3664-6722
Larisa SoldatovaGoldsmiths, University of London, 8 Lewisham Way, New Cross, London, SE14 6NW, UK.ORCID 0000-0001-6489-3029
Ross KingDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Philippa Fawcett Dr, Cambridge, CB3 0AS, United Kingdom.
Sophia AnaniadouDepatment of Computer Science, University of Manchester, M13 9PL, Manchester, UK.
Annika M SchoeneDepatment of Computer Science, University of Manchester, M13 9PL, Manchester, UK.
Maolin LiDepatment of Computer Science, University of Manchester, M13 9PL, Manchester, UK.ORCID 0000-0002-0828-2001
Fenia ChristopoulouDepatment of Computer Science, University of Manchester, M13 9PL, Manchester, UK.
José Luis AmbiteThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.ORCID 0000-0003-0087-080X
Joel MatthewThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Sahil GargThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Ulf HermjakobThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Daniel MarcuThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Emily ShengThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Tim BeißbarthInstitute of Medical Bioinformatics, University of Göttingen, Goldschmidtstrasse 1, 37077, Göttingen, Germany.
Edgar WingendergeneXplain GmbH, Am Exer19b, 38302, Wolfenbüttel, Germany.
Aram GalstyanThe Information Sciences Institute, University of Southern California, Marina del Rey, CA, 90089, US.
Xin GaoComputational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal, Thuwal, 23955, Saudi Arabia.ORCID 0000-0002-7108-3574
Brendan ChambersKnowledge Lab, Department of Sociology, University of Chicago, Chicago, IL, 60637, US.
Weidi PanMaster of Science in Statistics Program, University of Chicago, Chicago, IL, 60637, US.
Bohdan B KhomtchoukThe Institute of Genomics and Systems Biology, University of Chicago, Chicago, IL, 60637, US. bohdan@uchicago.edu.ORCID 0000-0001-9607-7528
James A EvansKnowledge Lab, Department of Sociology, University of Chicago, Chicago, IL, 60637, US. jevans@uchicago.edu.ORCID 0000-0001-9838-0707
Andrey RzhetskyThe Committee on Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, 60637, US. andrey.rzhetsky@uchicago.edu.ORCID 0000-0001-6959-7405

Funding

Modeling the temporal succession of phenotypes & environnnental cuesP50MH094267 · NIMH · UNIVERSITY OF CHICAGO · PI RZHETSKY, ANDREY · 2011 to 2015
$10.2M
MAPGen Knowledge Base (MAPGenKB) and Coordination CenterU01HL108634 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHOU, XIANGHONG JASMINE · 2011 to 2015
$5.3M
Mendelian Disease - Asthma Comorbidity to Find Subgroup-Specific Asthma GenesR01HL122712 · NHLBI · UNIVERSITY OF CHICAGO · PI OBER, CAROLE, RZHETSKY, ANDREY · 2015 to 2018
$3.1M
Third Coast HIV-Related Cardiovascular and Sleep Disorders K12 Career Development ProgramK12HL143959 · NHLBI · UNIVERSITY OF CHICAGO · PI ARDEHALI, HOSSEIN, SCHNEIDER, JOHN · 2018 to 2022
$1.5M
Biotechnology and Biological Sciences Research Council BB/D00425X/1Biotechnology and Biological Sciences Research Council BB/D006503/1Biotechnology and Biological Sciences Research Council BB/E018025/1Biotechnology and Biological Sciences Research Council BB/F008228/1Biotechnology and Biological Sciences Research Council BB/G000662/1Biotechnology and Biological Sciences Research Council BEP17028NHLBI NIH HHS K12 HL143959NHLBI NIH HHS R01 HL122712NHLBI NIH HHS U01 HL108634NIMH NIH HHS P50 MH094267
6 · The paper itself

Abstract

Machine reading (MR) is essential for unlocking valuable knowledge contained in millions of existing biomedical documents. Over the last two decades

Identifiers

PMID34671039
PMCPMC8528865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.