Evidence map›Paper›PMID 34670847›Full record

ReviewRNA (New York, N.Y.)2022

How do protein domains of low sequence complexity work?

Masato Kato, Xiaoming Zhou, Steven L McKnight

Abstract readReview
In one paragraph

Review in RNA (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
  2. Review
  3. Droplet growth, Ostwald's rule, and emergence of order in Fused in Sarcoma.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. A simple method for mapping the location of cross-β-forming regions within protein domains of low sequence complexity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. RNA glues it all.Nature cell biology · 2024
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Masato KatoDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas 75390, USA.
Xiaoming ZhouDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas 75390, USA.
Steven L McKnightDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas 75390, USA.

Funding

Targeting EWSR1-FLI1 through Functional, Structural and Chemical ApproachesU54CA231649 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI NIJHAWAN, DEEPAK · 2019 to 2019
$10.0M
A solid state conceptualization of information transfer from gene to message to proteinR35GM130358 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI STEVEN L MCKNIGHT · 2019 to 2026
$4.0M
NCI NIH HHS U54 CA231649NIGMS NIH HHS R35 GM130358
6 · The paper itself

Abstract

This review covers research findings reported over the past decade concerning the ability of low complexity (LC) domains to self-associate in a manner leading to their phase separation from aqueous solution. We focus our message upon the reductionist use of two forms of phase separation as biochemical assays to study how LC domains might function in living cells. Cells and their varied compartments represent extreme examples of material condensates. Over the past half century, biochemists, structural biologists, and molecular biologists have resolved the mechanisms driving innumerable forms of macromolecular condensation. In contrast, we remain largely ignorant as to how 10%-20% of our proteins actually work to assist in cell organization. This enigmatic 10%-20% of the proteome corresponds to gibberish-like LC sequences. We contend that many of these LC sequences move in and out of a structurally ordered, self-associated state as a means of offering a combination of organizational specificity and dynamic pliability to living cells. Finally, we speculate that ancient proteins may have behaved similarly, helping to condense, organize, and protect RNA early during evolution.

Indexed as

Biomolecular CondensatesEukaryotaEukaryotic CellsGlycolsHydrogelsHydrogen BondingIsoxazolesMethionineOrigin of LifeProtein Conformation, beta-StrandProtein DomainsProteinsRNASolutionsWaterGlycolshexamethylene glycolHydrogelsIsoxazolesMethionineProteinsRNASolutionsWatercross-β polymershydrogellow-complexity sequencesneurodegenerative diseasesphase separation

Identifiers

PMID34670847
PMCPMC8675291

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.