Evidence map›Paper›PMID 34669511›Full record

SynthesisAmerican journal of physiology. Cell physiology2021

Cross-species meta-analysis of transcriptome changes during the morula-to-blastocyst transition: metabolic and physiological changes take center stage.

Peter Z Schall, Keith E Latham

Abstract readComparative StudyMeta-Analysis
In one paragraph

Synthesis in American journal of physiology. Cell physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Peter Z SchallDepartment of Animal Science, Michigan State University, East Lansing, Michigan.
Keith E LathamDepartment of Animal Science, Michigan State University, East Lansing, Michigan.ORCID 0000-0003-1206-9059

Funding

Reproductive and Developmental Sciences Training Program - T32T32HD087166 · NICHD · MICHIGAN STATE UNIVERSITY · PI Ronald L Chandler, Keith E Latham · 2016 to 2026
$2.5M
HHS | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) T32HD087166NICHD NIH HHS T32 HD087166
6 · The paper itself

Abstract

The morula-to-blastocyst transition (MBT) culminates with formation of inner cell mass (ICM) and trophectoderm (TE) lineages. Recent studies identified signaling pathways driving lineage specification, but some features of these pathways display significant species divergence. To better understand evolutionary conservation of the MBT, we completed a meta-analysis of RNA sequencing data from five model species and ICMTE differences from four species. Although many genes change in expression during the MBT within any given species, the number of shared differentially expressed genes (DEGs) is comparatively small, and the number of shared ICMTE DEGs is even smaller. DEGs related to known lineage determining pathways (e.g.,

Indexed as

TranscriptomeAnimalsBiological EvolutionBlastocystCattleCell LineageDatabases, GeneticEmbryonic DevelopmentEnergy MetabolismGene Expression ProfilingGene Expression Regulation, DevelopmentalHumansMacaca mulattaMiceMorulaSpecies Specificityblastocyst formationearly lineage formationinner cell masstrophectoderm

Identifiers

PMID34669511
PMCPMC8714988

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.